PBX2_HUMAN.H11MO.0.C motif - HOmo sapiens COmprehensive MOdel COllection

We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.

Model info

Transcription factor

PBX2
(GeneCards)

Model

PBX2_HUMAN.H11MO.0.C

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

Integrative

Model release

HOCOMOCOv9

Model length

15

Quality

C

Motif rank

0

Consensus

KvMhKTGATTGWWKb

Best auROC (human)

Best auROC (mouse)

Peak sets in benchmark (human)

Peak sets in benchmark (mouse)

Aligned words

19

TF family

TALE-type homeo domain factors {3.1.4}

TF subfamily

HGNC

EntrezGene

GeneID:5089
(SSTAR profile)

UniProt ID

UniProt AC

P40425
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	5.74956
0.0005	6.4409600000000005
0.0001	7.868960000000001

GTEx tissue expression atlas

PBX2 expression

ReMap ChIP-seq dataset list

Motifs in JASPAR

MA1113.1 (PBX2; Homo sapiens)

PCM

	A	C	G	T
01	0.752	2.796	6.644	8.809
02	8.297	1.924	7.095	1.684
03	10.222	3.968	3.848	0.962
04	9.861	3.127	1.082	4.93
05	1.082	0.962	6.133	10.823
06	1.082	0.962	0.0	16.956
07	0.962	0.0	15.513	2.525
08	15.032	0.0	3.006	0.962
09	0.0	3.127	0.0	15.873
10	2.044	0.0	0.0	16.956
11	0.0	0.0	14.911	4.089
12	13.468	0.601	2.044	2.886
13	5.171	2.165	0.0	11.665
14	3.127	0.0	8.297	7.576
15	3.247	4.449	7.576	3.728

PWM

	A	C	G	T
01	-1.305	-0.44	0.297	0.554
02	0.499	-0.724	0.356	-0.819
03	0.692	-0.154	-0.18	-1.173
04	0.658	-0.351	-1.104	0.032
05	-1.104	-1.173	0.225	0.745
06	-1.104	-1.173	-2.009	1.171
07	-1.173	-2.009	1.086	-0.52
08	1.056	-2.009	-0.382	-1.173
09	-2.009	-0.351	-2.009	1.108
10	-0.68	-2.009	-2.009	1.171
11	-2.009	-2.009	1.048	-0.128
12	0.951	-1.412	-0.68	-0.415
13	0.074	-0.637	-2.009	0.816
14	-0.351	-2.009	0.499	0.415
15	-0.32	-0.056	0.415	-0.206