Model info
| Transcription factor | PBX2 (GeneCards) | ||||||||
| Model | PBX2_HUMAN.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 15 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | KvMhKTGATTGWWKb | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 19 | ||||||||
| TF family | TALE-type homeo domain factors {3.1.4} | ||||||||
| TF subfamily | PBX {3.1.4.4} | ||||||||
| HGNC | HGNC:8633 | ||||||||
| EntrezGene | GeneID:5089 (SSTAR profile) | ||||||||
| UniProt ID | PBX2_HUMAN | ||||||||
| UniProt AC | P40425 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | PBX2 expression | ||||||||
| ReMap ChIP-seq dataset list | PBX2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.752 | 2.796 | 6.644 | 8.809 |
| 02 | 8.297 | 1.924 | 7.095 | 1.684 |
| 03 | 10.222 | 3.968 | 3.848 | 0.962 |
| 04 | 9.861 | 3.127 | 1.082 | 4.93 |
| 05 | 1.082 | 0.962 | 6.133 | 10.823 |
| 06 | 1.082 | 0.962 | 0.0 | 16.956 |
| 07 | 0.962 | 0.0 | 15.513 | 2.525 |
| 08 | 15.032 | 0.0 | 3.006 | 0.962 |
| 09 | 0.0 | 3.127 | 0.0 | 15.873 |
| 10 | 2.044 | 0.0 | 0.0 | 16.956 |
| 11 | 0.0 | 0.0 | 14.911 | 4.089 |
| 12 | 13.468 | 0.601 | 2.044 | 2.886 |
| 13 | 5.171 | 2.165 | 0.0 | 11.665 |
| 14 | 3.127 | 0.0 | 8.297 | 7.576 |
| 15 | 3.247 | 4.449 | 7.576 | 3.728 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.305 | -0.44 | 0.297 | 0.554 |
| 02 | 0.499 | -0.724 | 0.356 | -0.819 |
| 03 | 0.692 | -0.154 | -0.18 | -1.173 |
| 04 | 0.658 | -0.351 | -1.104 | 0.032 |
| 05 | -1.104 | -1.173 | 0.225 | 0.745 |
| 06 | -1.104 | -1.173 | -2.009 | 1.171 |
| 07 | -1.173 | -2.009 | 1.086 | -0.52 |
| 08 | 1.056 | -2.009 | -0.382 | -1.173 |
| 09 | -2.009 | -0.351 | -2.009 | 1.108 |
| 10 | -0.68 | -2.009 | -2.009 | 1.171 |
| 11 | -2.009 | -2.009 | 1.048 | -0.128 |
| 12 | 0.951 | -1.412 | -0.68 | -0.415 |
| 13 | 0.074 | -0.637 | -2.009 | 0.816 |
| 14 | -0.351 | -2.009 | 0.499 | 0.415 |
| 15 | -0.32 | -0.056 | 0.415 | -0.206 |