We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPBX2
(GeneCards)
ModelPBX2_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length15
Quality
C
Motif rank
0
ConsensusKvMhKTGATTGWWKb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words19
TF familyTALE-type homeo domain factors {3.1.4}
TF subfamilyPBX {3.1.4.4}
HGNCHGNC:8633
EntrezGeneGeneID:5089
(SSTAR profile)
UniProt IDPBX2_HUMAN
UniProt ACP40425
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.74956
0.0005 6.4409600000000005
0.0001 7.868960000000001
GTEx tissue expression atlas PBX2 expression
ReMap ChIP-seq dataset list PBX2 datasets
Motifs in JASPAR
PCM
ACGT
010.7522.7966.6448.809
028.2971.9247.0951.684
0310.2223.9683.8480.962
049.8613.1271.0824.93
051.0820.9626.13310.823
061.0820.9620.016.956
070.9620.015.5132.525
0815.0320.03.0060.962
090.03.1270.015.873
102.0440.00.016.956
110.00.014.9114.089
1213.4680.6012.0442.886
135.1712.1650.011.665
143.1270.08.2977.576
153.2474.4497.5763.728
PWM
ACGT
01-1.305-0.440.2970.554
020.499-0.7240.356-0.819
030.692-0.154-0.18-1.173
040.658-0.351-1.1040.032
05-1.104-1.1730.2250.745
06-1.104-1.173-2.0091.171
07-1.173-2.0091.086-0.52
081.056-2.009-0.382-1.173
09-2.009-0.351-2.0091.108
10-0.68-2.009-2.0091.171
11-2.009-2.0091.048-0.128
120.951-1.412-0.68-0.415
130.074-0.637-2.0090.816
14-0.351-2.0090.4990.415
15-0.32-0.0560.415-0.206