We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPBX3
(GeneCards)
ModelPBX3_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv10
Model length23
Quality
A
Motif rank
0
ConsensusdGAbdGRCRKbnvnnnnvvSSMv
Best auROC (human)0.98
Best auROC (mouse)
Peak sets in benchmark (human)17
Peak sets in benchmark (mouse)
Aligned words504
TF familyTALE-type homeo domain factors {3.1.4}
TF subfamilyPBX {3.1.4.4}
HGNCHGNC:8634
EntrezGeneGeneID:5090
(SSTAR profile)
UniProt IDPBX3_HUMAN
UniProt ACP40426
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.44581
0.0005 7.4725600000000005
0.0001 11.76871
GTEx tissue expression atlas PBX3 expression
ReMap ChIP-seq dataset list PBX3 datasets
Motifs in JASPAR
MA1114.1 (PBX3; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
016.2010.79871.5430.01.011.67252.5862.89811.719.60364.9291.1252.0381.702271.2260.96
0214.2621.743.0561.90111.9870.7980.00.99439.8983.69916.6870.03.8450.01.1380.0
0314.19122.726165.075168.0010.02.042.6561.5410.08.1429.6933.0450.00.02.8910.0
042.8232.0813.9115.37519.5049.17749.06355.16517.45735.87615.294111.68711.4383.95553.839103.356
053.5660.047.6560.03.3321.02246.7340.012.4710.0109.6360.02.0170.0271.7161.85
0612.9790.08.4070.00.00.01.0220.0312.2231.857158.7392.9220.00.00.01.85
072.772291.9726.22924.2290.00.7561.10.00.0161.4271.6485.0940.04.7720.00.0
081.8650.00.9070.0271.6953.994157.88125.3581.6772.034.3620.9077.7090.015.8975.717
098.45423.206235.61715.6690.01.9473.1440.9339.05818.998121.57629.4150.996.60716.1848.201
101.5365.43210.740.7946.64510.10315.45818.55344.404150.178153.97627.9631.09416.95529.4616.709
1117.57311.19416.1978.71525.97668.88142.32845.48250.02987.93545.1426.5323.81215.57119.54315.093
1214.09718.21949.88515.18941.22252.86664.27525.21916.81354.80745.3666.22313.83425.95437.96218.071
1317.0820.15134.56114.17227.04652.92829.2242.65138.57588.01748.38522.5123.83827.87420.12512.864
1422.71614.93335.02513.86553.84637.6557.97539.50123.83440.72545.3322.40116.16417.89937.50220.633
1528.38320.07854.96413.13516.65231.24830.35932.94926.76262.23957.59829.2335.87927.50336.2426.778
1619.15715.93328.88113.70526.3536.32531.09647.29822.97571.70355.60828.8755.87534.09433.47928.648
1716.20114.25340.1743.72859.49429.67155.9212.96833.82425.39780.8868.95531.12721.76259.4646.174
1840.51516.38471.76611.98231.37314.52130.35214.83757.64653.62294.87630.32.8645.60115.4697.891
1911.97789.05618.16213.2045.53459.31811.6313.6467.209169.35124.17611.7270.95842.88514.8056.361
205.0839.4234.9556.21724.908300.2923.13312.289.18436.88118.2244.4853.81732.8598.2610.0
2117.9623.80517.4643.761281.84146.74516.74734.1218.099.38322.0285.0729.4975.2977.4020.785
22223.5725.37156.38122.06836.83813.06413.6011.7277.75817.6423.86214.38219.8668.7549.6325.487
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.569-3.2830.821-4.4-3.119-2.7320.515-2.265-0.961-1.1530.725-3.04-2.568-2.7172.15-3.156
02-0.77-2.699-2.218-2.626-0.939-3.283-4.4-3.1342.633-2.047-0.617-4.4-2.011-4.4-3.032-4.4
03-0.7751.3591.6541.672-4.4-2.567-2.341-2.797-4.4-1.311-1.144-2.221-4.4-4.4-2.267-4.4
04-2.288-2.55-1.996-1.703-0.464-1.1960.4470.563-0.5730.136-0.7021.265-0.984-1.9860.5391.188
05-2.08-4.40.418-4.4-2.14-3.110.398-4.4-0.9-4.41.246-4.4-2.577-4.42.152-2.649
06-0.862-4.4-1.28-4.4-4.4-4.4-3.11-4.42.291-2.6461.615-2.257-4.4-4.4-4.4-2.649
07-2.3042.224-1.565-0.251-4.4-3.319-3.057-4.4-4.41.632-2.743-1.753-4.4-1.813-4.4-4.4
08-2.642-4.4-3.196-4.42.152-1.9771.61-0.206-2.729-2.571-1.896-3.195-1.363-4.4-0.664-1.645
09-1.275-0.2932.009-0.678-4.4-2.606-2.192-3.175-1.209-0.491.349-0.06-3.133-1.509-0.647-1.304
10-2.8-1.693-1.045-3.287-1.504-1.104-0.691-0.5130.3481.561.585-0.11-3.061-0.601-0.058-1.495
11-0.566-1.005-0.646-1.246-0.1820.7840.30.3710.4661.0270.364-0.161-2.019-0.684-0.462-0.715
12-0.781-0.5310.463-0.7090.2740.5210.715-0.212-0.6090.5570.369-1.566-0.8-0.1830.192-0.539
13-0.594-0.4320.1-0.776-0.1430.522-0.0660.3080.2081.0280.433-0.323-2.013-0.113-0.433-0.87
14-0.314-0.7250.113-0.7970.5390.1840.6120.232-0.2670.2620.368-0.328-0.648-0.5480.18-0.409
15-0.095-0.4360.559-0.85-0.619-0.0-0.0290.052-0.1530.6830.606-0.066-1.619-0.1260.146-0.152
16-0.482-0.662-0.078-0.809-0.1680.149-0.0050.41-0.3030.8240.571-0.078-1.620.0860.068-0.086
17-0.646-0.770.248-2.0390.638-0.0510.576-0.8620.078-0.2050.943-1.22-0.004-0.3570.638-1.573
180.257-0.6350.824-0.9390.004-0.752-0.029-0.7310.6070.5351.102-0.03-2.275-1.664-0.691-1.341
19-0.9391.039-0.534-0.845-1.6760.635-0.968-0.813-1.4271.68-0.253-0.96-3.1570.313-0.733-1.545
20-1.755-1.171-1.778-1.566-0.2242.252-0.296-0.915-1.1960.164-0.531-1.871-2.0180.05-1.297-4.4
21-0.545-2.021-0.572-2.0312.1880.399-0.6130.087-0.538-1.175-0.345-1.757-1.163-1.716-1.402-3.294
221.957-0.2060.585-0.3430.163-0.855-0.816-2.705-1.357-0.562-0.266-0.762-0.446-1.241-1.15-1.684