Model info
| Transcription factor | PBX3 (GeneCards) | ||||||||
| Model | PBX3_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | WGAbdGRCRKb | ||||||||
| Best auROC (human) | 0.941 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 17 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 420 | ||||||||
| TF family | TALE-type homeo domain factors {3.1.4} | ||||||||
| TF subfamily | PBX {3.1.4.4} | ||||||||
| HGNC | HGNC:8634 | ||||||||
| EntrezGene | GeneID:5090 (SSTAR profile) | ||||||||
| UniProt ID | PBX3_HUMAN | ||||||||
| UniProt AC | P40426 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | PBX3 expression | ||||||||
| ReMap ChIP-seq dataset list | PBX3 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 78.0 | 27.0 | 63.0 | 252.0 |
| 02 | 17.0 | 8.0 | 392.0 | 3.0 |
| 03 | 399.0 | 4.0 | 9.0 | 8.0 |
| 04 | 30.0 | 110.0 | 137.0 | 143.0 |
| 05 | 49.0 | 38.0 | 103.0 | 230.0 |
| 06 | 16.0 | 15.0 | 374.0 | 15.0 |
| 07 | 244.0 | 22.0 | 152.0 | 2.0 |
| 08 | 18.0 | 370.0 | 8.0 | 24.0 |
| 09 | 229.0 | 7.0 | 143.0 | 41.0 |
| 10 | 24.0 | 44.0 | 288.0 | 64.0 |
| 11 | 40.0 | 144.0 | 179.0 | 57.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.292 | -1.318 | -0.501 | 0.867 |
| 02 | -1.75 | -2.416 | 1.307 | -3.162 |
| 03 | 1.324 | -2.962 | -2.316 | -2.416 |
| 04 | -1.218 | 0.046 | 0.263 | 0.305 |
| 05 | -0.746 | -0.992 | -0.019 | 0.776 |
| 06 | -1.805 | -1.864 | 1.26 | -1.864 |
| 07 | 0.835 | -1.511 | 0.366 | -3.413 |
| 08 | -1.697 | 1.249 | -2.416 | -1.429 |
| 09 | 0.772 | -2.527 | 0.305 | -0.918 |
| 10 | -1.429 | -0.85 | 1.0 | -0.486 |
| 11 | -0.942 | 0.312 | 0.528 | -0.599 |