We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPBX3
(GeneCards)
ModelPBX3_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
0
ConsensusWGAbdGRCRKb
Best auROC (human)0.941
Best auROC (mouse)
Peak sets in benchmark (human)17
Peak sets in benchmark (mouse)
Aligned words420
TF familyTALE-type homeo domain factors {3.1.4}
TF subfamilyPBX {3.1.4.4}
HGNCHGNC:8634
EntrezGeneGeneID:5090
(SSTAR profile)
UniProt IDPBX3_HUMAN
UniProt ACP40426
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.744415
0.0005 5.52317
0.0001 7.091735
GTEx tissue expression atlas PBX3 expression
ReMap ChIP-seq dataset list PBX3 datasets
Motifs in JASPAR
MA1114.1 (PBX3; Homo sapiens)
PCM
ACGT
0178.027.063.0252.0
0217.08.0392.03.0
03399.04.09.08.0
0430.0110.0137.0143.0
0549.038.0103.0230.0
0616.015.0374.015.0
07244.022.0152.02.0
0818.0370.08.024.0
09229.07.0143.041.0
1024.044.0288.064.0
1140.0144.0179.057.0
PWM
ACGT
01-0.292-1.318-0.5010.867
02-1.75-2.4161.307-3.162
031.324-2.962-2.316-2.416
04-1.2180.0460.2630.305
05-0.746-0.992-0.0190.776
06-1.805-1.8641.26-1.864
070.835-1.5110.366-3.413
08-1.6971.249-2.416-1.429
090.772-2.5270.305-0.918
10-1.429-0.851.0-0.486
11-0.9420.3120.528-0.599