Model info
| Transcription factor | PBX3 (GeneCards) | ||||||||
| Model | PBX3_HUMAN.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 9 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | YSAKTGGCh | ||||||||
| Best auROC (human) | 0.922 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 17 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 500 | ||||||||
| TF family | TALE-type homeo domain factors {3.1.4} | ||||||||
| TF subfamily | PBX {3.1.4.4} | ||||||||
| HGNC | HGNC:8634 | ||||||||
| EntrezGene | GeneID:5090 (SSTAR profile) | ||||||||
| UniProt ID | PBX3_HUMAN | ||||||||
| UniProt AC | P40426 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | PBX3 expression | ||||||||
| ReMap ChIP-seq dataset list | PBX3 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 25.0 | 114.0 | 26.0 | 335.0 |
| 02 | 11.0 | 87.0 | 365.0 | 37.0 |
| 03 | 487.0 | 4.0 | 9.0 | 0.0 |
| 04 | 7.0 | 51.0 | 72.0 | 370.0 |
| 05 | 7.0 | 3.0 | 20.0 | 470.0 |
| 06 | 1.0 | 0.0 | 499.0 | 0.0 |
| 07 | 187.0 | 2.0 | 311.0 | 0.0 |
| 08 | 21.0 | 391.0 | 7.0 | 81.0 |
| 09 | 192.0 | 79.0 | 68.0 | 161.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.561 | -0.091 | -1.525 | 0.978 |
| 02 | -2.311 | -0.357 | 1.063 | -1.189 |
| 03 | 1.351 | -3.126 | -2.484 | -4.4 |
| 04 | -2.694 | -0.879 | -0.543 | 1.077 |
| 05 | -2.694 | -3.325 | -1.77 | 1.315 |
| 06 | -3.903 | -4.4 | 1.375 | -4.4 |
| 07 | 0.399 | -3.573 | 0.904 | -4.4 |
| 08 | -1.725 | 1.132 | -2.694 | -0.427 |
| 09 | 0.425 | -0.452 | -0.599 | 0.25 |