We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPBX3
(GeneCards)
ModelPBX3_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
A
Motif rank
1
ConsensusYSAKTGGCh
Best auROC (human)0.922
Best auROC (mouse)
Peak sets in benchmark (human)17
Peak sets in benchmark (mouse)
Aligned words500
TF familyTALE-type homeo domain factors {3.1.4}
TF subfamilyPBX {3.1.4.4}
HGNCHGNC:8634
EntrezGeneGeneID:5090
(SSTAR profile)
UniProt IDPBX3_HUMAN
UniProt ACP40426
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.186204999999999
0.0005 6.080715
0.0001 7.692919999999999
GTEx tissue expression atlas PBX3 expression
ReMap ChIP-seq dataset list PBX3 datasets
Motifs in JASPAR
PCM
ACGT
0125.0114.026.0335.0
0211.087.0365.037.0
03487.04.09.00.0
047.051.072.0370.0
057.03.020.0470.0
061.00.0499.00.0
07187.02.0311.00.0
0821.0391.07.081.0
09192.079.068.0161.0
PWM
ACGT
01-1.561-0.091-1.5250.978
02-2.311-0.3571.063-1.189
031.351-3.126-2.484-4.4
04-2.694-0.879-0.5431.077
05-2.694-3.325-1.771.315
06-3.903-4.41.375-4.4
070.399-3.5730.904-4.4
08-1.7251.132-2.694-0.427
090.425-0.452-0.5990.25