We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPDX1
(GeneCards)
ModelPDX1_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusdTGATWRAKKdb
Best auROC (human)0.976
Best auROC (mouse)0.814
Peak sets in benchmark (human)10
Peak sets in benchmark (mouse)4
Aligned words377
TF familyHOX-related factors {3.1.1}
TF subfamilyPDX {3.1.1.15}
HGNCHGNC:6107
EntrezGeneGeneID:3651
(SSTAR profile)
UniProt IDPDX1_HUMAN
UniProt ACP52945
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.390175
0.0005 12.216885
0.0001 15.84991
GTEx tissue expression atlas PDX1 expression
ReMap ChIP-seq dataset list PDX1 datasets
Motifs in JASPAR
MA0132.1 (Pdx1; Mus musculus)
MA0132.2 (PDX1; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0143.00.03.0123.04.00.00.027.015.00.01.084.05.00.04.068.0
022.00.062.03.00.00.00.00.01.00.07.00.024.03.0269.06.0
0326.00.00.01.03.00.00.00.0335.01.00.02.09.00.00.00.0
044.048.013.0308.00.00.00.01.00.00.00.00.00.00.00.03.0
052.00.00.02.015.00.01.032.02.01.00.010.035.02.052.0223.0
0619.02.033.00.00.02.01.00.01.02.049.01.044.014.0204.05.0
0763.01.00.00.020.00.00.00.0279.03.04.01.05.01.00.00.0
0815.015.047.0290.00.03.00.02.01.01.00.02.00.00.01.00.0
090.02.07.07.02.01.05.011.03.010.010.025.014.08.0198.074.0
101.01.015.02.010.03.03.05.081.023.092.024.030.09.059.019.0
1111.045.047.019.011.010.03.012.025.060.057.027.04.09.027.010.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.595-4.167-1.961.64-1.7-4.167-4.1670.134-0.443-4.167-2.861.26-1.494-4.167-1.71.05
02-2.312-4.1670.958-1.96-4.167-4.167-4.167-4.167-2.86-4.167-1.178-4.1670.018-1.962.421-1.324
030.097-4.167-4.167-2.86-1.96-4.167-4.167-4.1672.64-2.86-4.167-2.312-0.938-4.167-4.167-4.167
04-1.70.704-0.5822.556-4.167-4.167-4.167-2.86-4.167-4.167-4.167-4.167-4.167-4.167-4.167-1.96
05-2.312-4.167-4.167-2.312-0.443-4.167-2.860.302-2.312-2.86-4.167-0.8360.391-2.3120.7832.234
06-0.212-2.3120.332-4.167-4.167-2.312-2.86-4.167-2.86-2.3120.724-2.860.617-0.512.145-1.494
070.974-2.86-4.167-4.167-0.161-4.167-4.167-4.1672.457-1.96-1.7-2.86-1.494-2.86-4.167-4.167
08-0.443-0.4430.6832.496-4.167-1.96-4.167-2.312-2.86-2.86-4.167-2.312-4.167-4.167-2.86-4.167
09-4.167-2.312-1.178-1.178-2.312-2.86-1.494-0.744-1.96-0.836-0.8360.058-0.51-1.0512.1151.134
10-2.86-2.86-0.443-2.312-0.836-1.96-1.96-1.4941.224-0.0241.3510.0180.238-0.9380.909-0.212
11-0.7440.640.683-0.212-0.744-0.836-1.96-0.660.0580.9250.8740.134-1.7-0.9380.134-0.836