Check the newest release v12
Model info
Transcription factorPDX1
(GeneCards)
ModelPDX1_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusdTGATWRAKKdb
Best auROC (human)0.976
Best auROC (mouse)0.814
Peak sets in benchmark (human)10
Peak sets in benchmark (mouse)4
Aligned words377
TF familyHOX-related factors {3.1.1}
TF subfamilyPDX {3.1.1.15}
HGNCHGNC:6107
EntrezGeneGeneID:3651
(SSTAR profile)
UniProt IDPDX1_HUMAN
UniProt ACP52945
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.390175
0.0005 12.216885
0.0001 15.84991
GTEx tissue expression atlas PDX1 expression
ReMap ChIP-seq dataset list PDX1 datasets
Motifs in JASPAR
MA0132.1 (Pdx1; Mus musculus)
MA0132.2 (PDX1; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0143.00.03.0123.04.00.00.027.015.00.01.084.05.00.04.068.0
022.00.062.03.00.00.00.00.01.00.07.00.024.03.0269.06.0
0326.00.00.01.03.00.00.00.0335.01.00.02.09.00.00.00.0
044.048.013.0308.00.00.00.01.00.00.00.00.00.00.00.03.0
052.00.00.02.015.00.01.032.02.01.00.010.035.02.052.0223.0
0619.02.033.00.00.02.01.00.01.02.049.01.044.014.0204.05.0
0763.01.00.00.020.00.00.00.0279.03.04.01.05.01.00.00.0
0815.015.047.0290.00.03.00.02.01.01.00.02.00.00.01.00.0
090.02.07.07.02.01.05.011.03.010.010.025.014.08.0198.074.0
101.01.015.02.010.03.03.05.081.023.092.024.030.09.059.019.0
1111.045.047.019.011.010.03.012.025.060.057.027.04.09.027.010.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.595-4.167-1.961.64-1.7-4.167-4.1670.134-0.443-4.167-2.861.26-1.494-4.167-1.71.05
02-2.312-4.1670.958-1.96-4.167-4.167-4.167-4.167-2.86-4.167-1.178-4.1670.018-1.962.421-1.324
030.097-4.167-4.167-2.86-1.96-4.167-4.167-4.1672.64-2.86-4.167-2.312-0.938-4.167-4.167-4.167
04-1.70.704-0.5822.556-4.167-4.167-4.167-2.86-4.167-4.167-4.167-4.167-4.167-4.167-4.167-1.96
05-2.312-4.167-4.167-2.312-0.443-4.167-2.860.302-2.312-2.86-4.167-0.8360.391-2.3120.7832.234
06-0.212-2.3120.332-4.167-4.167-2.312-2.86-4.167-2.86-2.3120.724-2.860.617-0.512.145-1.494
070.974-2.86-4.167-4.167-0.161-4.167-4.167-4.1672.457-1.96-1.7-2.86-1.494-2.86-4.167-4.167
08-0.443-0.4430.6832.496-4.167-1.96-4.167-2.312-2.86-2.86-4.167-2.312-4.167-4.167-2.86-4.167
09-4.167-2.312-1.178-1.178-2.312-2.86-1.494-0.744-1.96-0.836-0.8360.058-0.51-1.0512.1151.134
10-2.86-2.86-0.443-2.312-0.836-1.96-1.96-1.4941.224-0.0241.3510.0180.238-0.9380.909-0.212
11-0.7440.640.683-0.212-0.744-0.836-1.96-0.660.0580.9250.8740.134-1.7-0.9380.134-0.836