Transcription factor | PDX1 (GeneCards) | ||||||||
Model | PDX1_HUMAN.H11MO.0.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 9 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | TGAYWRAKK | ||||||||
Best auROC (human) | 0.96 | ||||||||
Best auROC (mouse) | 0.814 | ||||||||
Peak sets in benchmark (human) | 10 | ||||||||
Peak sets in benchmark (mouse) | 4 | ||||||||
Aligned words | 494 | ||||||||
TF family | HOX-related factors {3.1.1} | ||||||||
TF subfamily | PDX {3.1.1.15} | ||||||||
HGNC | HGNC:6107 | ||||||||
EntrezGene | GeneID:3651 (SSTAR profile) | ||||||||
UniProt ID | PDX1_HUMAN | ||||||||
UniProt AC | P52945 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | PDX1 expression | ||||||||
ReMap ChIP-seq dataset list | PDX1 datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 95.0 | 2.0 | 15.0 | 382.0 |
02 | 38.0 | 13.0 | 424.0 | 19.0 |
03 | 471.0 | 9.0 | 2.0 | 12.0 |
04 | 14.0 | 74.0 | 31.0 | 375.0 |
05 | 89.0 | 7.0 | 72.0 | 326.0 |
06 | 80.0 | 32.0 | 372.0 | 10.0 |
07 | 441.0 | 30.0 | 17.0 | 6.0 |
08 | 28.0 | 32.0 | 77.0 | 357.0 |
09 | 34.0 | 38.0 | 278.0 | 144.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.259 | -3.562 | -2.022 | 1.121 |
02 | -1.151 | -2.151 | 1.225 | -1.806 |
03 | 1.329 | -2.473 | -3.562 | -2.222 |
04 | -2.085 | -0.504 | -1.346 | 1.102 |
05 | -0.323 | -2.683 | -0.531 | 0.963 |
06 | -0.427 | -1.316 | 1.094 | -2.382 |
07 | 1.264 | -1.377 | -1.908 | -2.807 |
08 | -1.443 | -1.316 | -0.465 | 1.053 |
09 | -1.258 | -1.151 | 0.804 | 0.152 |