Model info
| Transcription factor | PDX1 (GeneCards) | ||||||||
| Model | PDX1_HUMAN.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 9 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | dYTAATKRb | ||||||||
| Best auROC (human) | 0.824 | ||||||||
| Best auROC (mouse) | 0.827 | ||||||||
| Peak sets in benchmark (human) | 10 | ||||||||
| Peak sets in benchmark (mouse) | 4 | ||||||||
| Aligned words | 504 | ||||||||
| TF family | HOX-related factors {3.1.1} | ||||||||
| TF subfamily | PDX {3.1.1.15} | ||||||||
| HGNC | HGNC:6107 | ||||||||
| EntrezGene | GeneID:3651 (SSTAR profile) | ||||||||
| UniProt ID | PDX1_HUMAN | ||||||||
| UniProt AC | P52945 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | PDX1 expression | ||||||||
| ReMap ChIP-seq dataset list | PDX1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 259.0 | 21.0 | 98.0 | 120.0 |
| 02 | 13.0 | 80.0 | 63.0 | 342.0 |
| 03 | 43.0 | 6.0 | 3.0 | 446.0 |
| 04 | 423.0 | 14.0 | 57.0 | 4.0 |
| 05 | 484.0 | 4.0 | 9.0 | 1.0 |
| 06 | 13.0 | 3.0 | 39.0 | 443.0 |
| 07 | 4.0 | 4.0 | 195.0 | 295.0 |
| 08 | 327.0 | 8.0 | 149.0 | 14.0 |
| 09 | 41.0 | 143.0 | 123.0 | 191.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.726 | -1.721 | -0.236 | -0.036 |
| 02 | -2.159 | -0.435 | -0.669 | 1.003 |
| 03 | -1.04 | -2.815 | -3.321 | 1.267 |
| 04 | 1.214 | -2.092 | -0.767 | -3.122 |
| 05 | 1.349 | -3.122 | -2.48 | -3.9 |
| 06 | -2.159 | -3.321 | -1.134 | 1.26 |
| 07 | -3.122 | -3.122 | 0.444 | 0.856 |
| 08 | 0.958 | -2.58 | 0.178 | -2.092 |
| 09 | -1.086 | 0.137 | -0.012 | 0.424 |