Model info
| Transcription factor | Pdx1 | ||||||||
| Model | PDX1_MOUSE.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 9 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vYTAATGRb | ||||||||
| Best auROC (human) | 0.752 | ||||||||
| Best auROC (mouse) | 0.895 | ||||||||
| Peak sets in benchmark (human) | 10 | ||||||||
| Peak sets in benchmark (mouse) | 4 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | HOX-related factors {3.1.1} | ||||||||
| TF subfamily | PDX {3.1.1.15} | ||||||||
| MGI | MGI:102851 | ||||||||
| EntrezGene | GeneID:18609 (SSTAR profile) | ||||||||
| UniProt ID | PDX1_MOUSE | ||||||||
| UniProt AC | P52946 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Pdx1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 191.0 | 118.0 | 133.0 | 58.0 |
| 02 | 26.0 | 187.0 | 26.0 | 261.0 |
| 03 | 42.0 | 0.0 | 0.0 | 458.0 |
| 04 | 483.0 | 4.0 | 11.0 | 2.0 |
| 05 | 498.0 | 1.0 | 0.0 | 1.0 |
| 06 | 1.0 | 2.0 | 9.0 | 488.0 |
| 07 | 3.0 | 7.0 | 388.0 | 102.0 |
| 08 | 355.0 | 7.0 | 113.0 | 25.0 |
| 09 | 22.0 | 196.0 | 137.0 | 145.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.42 | -0.057 | 0.061 | -0.754 |
| 02 | -1.525 | 0.399 | -1.525 | 0.73 |
| 03 | -1.067 | -4.4 | -4.4 | 1.29 |
| 04 | 1.343 | -3.126 | -2.311 | -3.573 |
| 05 | 1.373 | -3.903 | -4.4 | -3.903 |
| 06 | -3.903 | -3.573 | -2.484 | 1.353 |
| 07 | -3.325 | -2.694 | 1.124 | -0.201 |
| 08 | 1.036 | -2.694 | -0.1 | -1.561 |
| 09 | -1.681 | 0.445 | 0.091 | 0.147 |