Model info
| Transcription factor | CBFB (GeneCards) | ||||||||
| Model | PEBB_HUMAN.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 11 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | YbTGTGGTYdb | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 23 | ||||||||
| TF family | |||||||||
| TF subfamily | |||||||||
| HGNC | HGNC:1539 | ||||||||
| EntrezGene | GeneID:865 (SSTAR profile) | ||||||||
| UniProt ID | PEBB_HUMAN | ||||||||
| UniProt AC | Q13951 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | CBFB expression | ||||||||
| ReMap ChIP-seq dataset list | CBFB datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.348 | 6.064 | 4.112 | 12.476 |
| 02 | 0.976 | 9.618 | 3.067 | 9.339 |
| 03 | 0.697 | 0.0 | 1.115 | 21.188 |
| 04 | 0.0 | 3.485 | 18.679 | 0.836 |
| 05 | 0.0 | 5.715 | 0.0 | 17.285 |
| 06 | 1.673 | 0.0 | 21.327 | 0.0 |
| 07 | 0.836 | 0.0 | 22.164 | 0.0 |
| 08 | 0.0 | 0.0 | 5.436 | 17.564 |
| 09 | 1.255 | 9.758 | 1.115 | 10.873 |
| 10 | 8.782 | 0.836 | 4.321 | 9.061 |
| 11 | 1.255 | 7.388 | 7.806 | 6.552 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.753 | 0.047 | -0.289 | 0.708 |
| 02 | -1.312 | 0.465 | -0.529 | 0.438 |
| 03 | -1.484 | -2.121 | -1.236 | 1.213 |
| 04 | -2.121 | -0.426 | 1.091 | -1.394 |
| 05 | -2.121 | -0.005 | -2.121 | 1.017 |
| 06 | -0.978 | -2.121 | 1.219 | -2.121 |
| 07 | -1.394 | -2.121 | 1.256 | -2.121 |
| 08 | -2.121 | -2.121 | -0.049 | 1.032 |
| 09 | -1.165 | 0.478 | -1.236 | 0.579 |
| 10 | 0.381 | -1.394 | -0.247 | 0.41 |
| 11 | -1.165 | 0.224 | 0.274 | 0.116 |