We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPHOX2A
(GeneCards)
ModelPHX2A_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length11
Quality
D
Motif rank
0
ConsensusTAATYTAATTA
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words7919
TF familyPaired-related HD factors {3.1.3}
TF subfamilyPHOX {3.1.3.18}
HGNCHGNC:691
EntrezGeneGeneID:401
(SSTAR profile)
UniProt IDPHX2A_HUMAN
UniProt ACO14813
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.508575
0.0005 4.90699
0.0001 7.650265
GTEx tissue expression atlas PHOX2A expression
ReMap ChIP-seq dataset list PHOX2A datasets
Motifs in JASPAR
PCM
ACGT
01554.75218.75128.757009.75
027287.2561.25343.25220.25
037831.530.527.522.5
04276.251263.25121.256251.25
05127.02803.0754.04228.0
060.02584.00.05328.0
076494.0109.01263.046.0
087820.519.552.519.5
090.751.751.757907.75
10227.5101.59.57573.5
117248.581.5178.5403.5
PWM
ACGT
01-1.268-2.193-2.7161.264
021.303-3.44-1.746-2.186
031.375-4.102-4.198-4.382
04-1.962-0.448-2.7751.15
05-2.7290.348-0.9630.759
06-6.7830.267-6.7830.99
071.188-2.879-0.448-3.715
081.374-4.512-3.588-4.512
09-6.494-6.206-6.2061.385
10-2.154-2.949-5.1281.342
111.298-3.163-2.394-1.585