We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPHOX2B
(GeneCards)
ModelPHX2B_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length11
Quality
D
Motif rank
0
ConsensusWAATYTAATTA
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words24552
TF familyPaired-related HD factors {3.1.3}
TF subfamilyPHOX {3.1.3.18}
HGNCHGNC:9143
EntrezGeneGeneID:8929
(SSTAR profile)
UniProt IDPHX2B_HUMAN
UniProt ACQ99453
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.2733
0.0005 5.552025
0.0001 8.03174
GTEx tissue expression atlas PHOX2B expression
ReMap ChIP-seq dataset list PHOX2B datasets
Motifs in JASPAR
MA0681.1 (Phox2b; Mus musculus)
PCM
ACGT
012601.3451641.4011333.19319431.915
0222735.088228.9881232.943810.835
0324678.479106.912122.71599.748
04897.1733849.034428.29319833.353
05616.0419156.5022452.15712783.154
060.08161.9070.016845.947
0720169.202444.6464112.625281.381
0824492.41990.723297.962126.749
096.85610.1215.5524985.326
10670.411472.6551.10123813.692
1120723.041982.811286.2812015.721
PWM
ACGT
01-0.876-1.336-1.5441.134
021.291-3.296-1.622-2.04
031.373-4.046-3.911-4.113
04-1.939-0.485-2.6751.154
05-2.3140.381-0.9350.715
06-7.8120.266-7.8120.991
071.171-2.638-0.419-3.092
081.365-4.206-3.036-3.879
09-6.502-6.203-6.6511.385
10-2.229-2.577-4.7591.337
111.198-1.848-1.58-1.131