Model info
| Transcription factor | Pou1f1 | ||||||||
| Model | PIT1_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 13 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bWMWTGvAWATWh | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 39 | ||||||||
| TF family | POU domain factors {3.1.10} | ||||||||
| TF subfamily | POU1 (Pit-1-like factors) {3.1.10.1} | ||||||||
| MGI | MGI:97588 | ||||||||
| EntrezGene | GeneID:18736 (SSTAR profile) | ||||||||
| UniProt ID | PIT1_MOUSE | ||||||||
| UniProt AC | Q00286 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Pou1f1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 3.09 | 16.794 | 4.558 | 13.368 |
| 02 | 8.81 | 5.384 | 1.713 | 21.903 |
| 03 | 15.173 | 16.886 | 4.772 | 0.979 |
| 04 | 24.962 | 4.038 | 0.0 | 8.81 |
| 05 | 3.181 | 0.0 | 0.0 | 34.629 |
| 06 | 0.612 | 0.0 | 37.198 | 0.0 |
| 07 | 21.536 | 6.241 | 5.139 | 4.895 |
| 08 | 34.751 | 0.0 | 0.0 | 3.059 |
| 09 | 10.278 | 0.0 | 1.835 | 25.696 |
| 10 | 33.283 | 0.0 | 1.224 | 3.304 |
| 11 | 9.911 | 0.0 | 0.0 | 27.899 |
| 12 | 20.19 | 0.0 | 5.873 | 11.747 |
| 13 | 6.302 | 11.808 | 4.956 | 14.745 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.952 | 0.536 | -0.639 | 0.321 |
| 02 | -0.064 | -0.499 | -1.374 | 0.789 |
| 03 | 0.44 | 0.541 | -0.601 | -1.703 |
| 04 | 0.915 | -0.739 | -2.434 | -0.064 |
| 05 | -0.93 | -2.434 | -2.434 | 1.233 |
| 06 | -1.919 | -2.434 | 1.302 | -2.434 |
| 07 | 0.773 | -0.371 | -0.538 | -0.58 |
| 08 | 1.236 | -2.434 | -2.434 | -0.96 |
| 09 | 0.077 | -2.434 | -1.329 | 0.943 |
| 10 | 1.194 | -2.434 | -1.581 | -0.9 |
| 11 | 0.043 | -2.434 | -2.434 | 1.023 |
| 12 | 0.711 | -2.434 | -0.424 | 0.2 |
| 13 | -0.363 | 0.205 | -0.569 | 0.413 |