Check the newest release v13
Model info
Transcription factorPITX1
(GeneCards)
ModelPITX1_HUMAN.H11DI.0.D
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
D
Motif rank
0
ConsensusndGGMTTWdn
Best auROC (human)0.546
Best auROC (mouse)0.884
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)4
Aligned words500
TF familyPaired-related HD factors {3.1.3}
TF subfamilyPITX {3.1.3.19}
HGNCHGNC:9004
EntrezGeneGeneID:5307
(SSTAR profile)
UniProt IDPITX1_HUMAN
UniProt ACP78337
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 11.43829
0.0005 13.356079999999999
0.0001 15.803755
GTEx tissue expression atlas PITX1 expression
ReMap ChIP-seq dataset list PITX1 datasets
Motifs in JASPAR
MA0682.1 (Pitx1; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0131.06.0101.017.026.02.017.039.038.08.096.029.016.05.057.012.0
022.01.0105.03.00.00.021.00.020.02.0244.05.02.00.094.01.0
030.00.024.00.00.00.03.00.015.00.0446.03.00.00.09.00.0
046.09.00.00.00.00.00.00.0332.0137.00.013.03.00.00.00.0
050.00.02.0339.00.03.01.0142.00.00.00.00.00.00.00.013.0
060.00.00.00.00.00.00.03.00.00.00.03.00.010.04.0480.0
070.00.00.00.07.00.00.03.03.00.00.01.0315.01.05.0165.0
08155.014.0113.043.01.00.00.00.01.00.03.01.090.017.037.025.0
0970.059.072.046.02.07.06.016.039.057.038.019.015.017.012.025.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.008-1.61.165-0.599-0.181-2.584-0.5990.2190.193-1.3281.114-0.074-0.658-1.770.595-0.938
02-2.584-3.1261.203-2.234-4.4-4.4-0.392-4.4-0.439-2.5842.044-1.77-2.584-4.41.093-3.126
03-4.4-4.4-0.26-4.4-4.4-4.4-2.234-4.4-0.721-4.42.647-2.234-4.4-4.4-1.215-4.4
04-1.6-1.215-4.4-4.4-4.4-4.4-4.4-4.42.3521.468-4.4-0.86-2.234-4.4-4.4-4.4
05-4.4-4.4-2.5842.373-4.4-2.234-3.1261.504-4.4-4.4-4.4-4.4-4.4-4.4-4.4-0.86
06-4.4-4.4-4.4-4.4-4.4-4.4-4.4-2.234-4.4-4.4-4.4-2.234-4.4-1.114-1.9752.72
07-4.4-4.4-4.4-4.4-1.454-4.4-4.4-2.234-2.234-4.4-4.4-3.1262.299-3.126-1.771.654
081.592-0.7881.2760.316-3.126-4.4-4.4-4.4-3.126-4.4-2.234-3.1261.05-0.5990.167-0.22
090.80.630.8280.383-2.584-1.454-1.6-0.6580.2190.5950.193-0.49-0.721-0.599-0.938-0.22