We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPITX1
(GeneCards)
ModelPITX1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
D
Motif rank
0
ConsensusvRGGMTTWd
Best auROC (human)0.544
Best auROC (mouse)0.885
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)4
Aligned words500
TF familyPaired-related HD factors {3.1.3}
TF subfamilyPITX {3.1.3.19}
HGNCHGNC:9004
EntrezGeneGeneID:5307
(SSTAR profile)
UniProt IDPITX1_HUMAN
UniProt ACP78337
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.626035
0.0005 6.5964849999999995
0.0001 7.857245000000001
GTEx tissue expression atlas PITX1 expression
ReMap ChIP-seq dataset list PITX1 datasets
Motifs in JASPAR
PCM
ACGT
01187.072.0175.066.0
02114.012.0285.089.0
0329.00.0466.05.0
0418.04.0474.04.0
05296.0195.02.07.0
061.02.01.0496.0
072.033.09.0456.0
08334.01.08.0157.0
09229.031.0184.056.0
PWM
ACGT
010.399-0.5430.333-0.628
02-0.091-2.2340.817-0.335
03-1.421-4.41.307-2.961
04-1.868-3.1261.324-3.126
050.8550.44-3.573-2.694
06-3.903-3.573-3.9031.369
07-3.573-1.298-2.4841.285
080.975-3.903-2.5840.225
090.6-1.3580.383-0.788