Transcription factor | Pitx1 | ||||||||
Model | PITX1_MOUSE.H11DI.0.C | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 11 | ||||||||
Quality | C | ||||||||
Motif rank | 0 | ||||||||
Consensus | nvdGGMTTAdn | ||||||||
Best auROC (human) | 0.523 | ||||||||
Best auROC (mouse) | 0.887 | ||||||||
Peak sets in benchmark (human) | 2 | ||||||||
Peak sets in benchmark (mouse) | 4 | ||||||||
Aligned words | 390 | ||||||||
TF family | Paired-related HD factors {3.1.3} | ||||||||
TF subfamily | PITX {3.1.3.19} | ||||||||
MGI | MGI:107374 | ||||||||
EntrezGene | GeneID:18740 (SSTAR profile) | ||||||||
UniProt ID | PITX1_MOUSE | ||||||||
UniProt AC | P70314 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Pitx1 expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 54.0 | 19.0 | 44.0 | 11.0 | 51.0 | 16.0 | 10.0 | 17.0 | 39.0 | 19.0 | 33.0 | 17.0 | 16.0 | 13.0 | 28.0 | 3.0 |
02 | 41.0 | 9.0 | 93.0 | 17.0 | 23.0 | 1.0 | 12.0 | 31.0 | 25.0 | 8.0 | 67.0 | 15.0 | 12.0 | 6.0 | 26.0 | 4.0 |
03 | 13.0 | 1.0 | 86.0 | 1.0 | 9.0 | 1.0 | 13.0 | 1.0 | 39.0 | 2.0 | 150.0 | 7.0 | 8.0 | 0.0 | 59.0 | 0.0 |
04 | 2.0 | 1.0 | 66.0 | 0.0 | 0.0 | 0.0 | 4.0 | 0.0 | 19.0 | 10.0 | 275.0 | 4.0 | 0.0 | 0.0 | 9.0 | 0.0 |
05 | 8.0 | 13.0 | 0.0 | 0.0 | 8.0 | 3.0 | 0.0 | 0.0 | 231.0 | 114.0 | 4.0 | 5.0 | 1.0 | 1.0 | 2.0 | 0.0 |
06 | 0.0 | 0.0 | 0.0 | 248.0 | 0.0 | 0.0 | 0.0 | 131.0 | 0.0 | 0.0 | 0.0 | 6.0 | 0.0 | 0.0 | 0.0 | 5.0 |
07 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 2.0 | 24.0 | 2.0 | 362.0 |
08 | 1.0 | 0.0 | 0.0 | 1.0 | 20.0 | 0.0 | 0.0 | 4.0 | 2.0 | 0.0 | 0.0 | 0.0 | 280.0 | 1.0 | 1.0 | 80.0 |
09 | 138.0 | 11.0 | 112.0 | 42.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 1.0 | 0.0 | 47.0 | 7.0 | 23.0 | 8.0 |
10 | 61.0 | 50.0 | 49.0 | 25.0 | 8.0 | 3.0 | 1.0 | 6.0 | 27.0 | 46.0 | 31.0 | 32.0 | 14.0 | 14.0 | 10.0 | 13.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 0.787 | -0.245 | 0.584 | -0.778 | 0.73 | -0.413 | -0.87 | -0.354 | 0.464 | -0.245 | 0.299 | -0.354 | -0.413 | -0.616 | 0.137 | -1.993 |
02 | 0.514 | -0.971 | 1.328 | -0.354 | -0.057 | -2.892 | -0.693 | 0.237 | 0.025 | -1.084 | 1.002 | -0.476 | -0.693 | -1.357 | 0.064 | -1.733 |
03 | -0.616 | -2.892 | 1.25 | -2.892 | -0.971 | -2.892 | -0.616 | -2.892 | 0.464 | -2.345 | 1.804 | -1.211 | -1.084 | -4.195 | 0.875 | -4.195 |
04 | -2.345 | -2.892 | 0.987 | -4.195 | -4.195 | -4.195 | -1.733 | -4.195 | -0.245 | -0.87 | 2.409 | -1.733 | -4.195 | -4.195 | -0.971 | -4.195 |
05 | -1.084 | -0.616 | -4.195 | -4.195 | -1.084 | -1.993 | -4.195 | -4.195 | 2.235 | 1.531 | -1.733 | -1.527 | -2.892 | -2.892 | -2.345 | -4.195 |
06 | -4.195 | -4.195 | -4.195 | 2.306 | -4.195 | -4.195 | -4.195 | 1.669 | -4.195 | -4.195 | -4.195 | -1.357 | -4.195 | -4.195 | -4.195 | -1.527 |
07 | -4.195 | -4.195 | -4.195 | -4.195 | -4.195 | -4.195 | -4.195 | -4.195 | -4.195 | -4.195 | -4.195 | -4.195 | -2.345 | -0.015 | -2.345 | 2.684 |
08 | -2.892 | -4.195 | -4.195 | -2.892 | -0.195 | -4.195 | -4.195 | -1.733 | -2.345 | -4.195 | -4.195 | -4.195 | 2.427 | -2.892 | -2.892 | 1.178 |
09 | 1.721 | -0.778 | 1.513 | 0.538 | -4.195 | -4.195 | -4.195 | -2.892 | -4.195 | -4.195 | -2.892 | -4.195 | 0.649 | -1.211 | -0.057 | -1.084 |
10 | 0.908 | 0.711 | 0.691 | 0.025 | -1.084 | -1.993 | -2.892 | -1.357 | 0.101 | 0.628 | 0.237 | 0.269 | -0.543 | -0.543 | -0.87 | -0.616 |