We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPitx1
ModelPITX1_MOUSE.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
C
Motif rank
0
ConsensusnvdGGMTTAdn
Best auROC (human)0.523
Best auROC (mouse)0.887
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)4
Aligned words390
TF familyPaired-related HD factors {3.1.3}
TF subfamilyPITX {3.1.3.19}
MGIMGI:107374
EntrezGeneGeneID:18740
(SSTAR profile)
UniProt IDPITX1_MOUSE
UniProt ACP70314
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 11.22387
0.0005 12.758469999999999
0.0001 15.410150000000002
GTEx tissue expression atlas Pitx1 expression
Motifs in JASPAR
MA0682.1 (Pitx1; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0154.019.044.011.051.016.010.017.039.019.033.017.016.013.028.03.0
0241.09.093.017.023.01.012.031.025.08.067.015.012.06.026.04.0
0313.01.086.01.09.01.013.01.039.02.0150.07.08.00.059.00.0
042.01.066.00.00.00.04.00.019.010.0275.04.00.00.09.00.0
058.013.00.00.08.03.00.00.0231.0114.04.05.01.01.02.00.0
060.00.00.0248.00.00.00.0131.00.00.00.06.00.00.00.05.0
070.00.00.00.00.00.00.00.00.00.00.00.02.024.02.0362.0
081.00.00.01.020.00.00.04.02.00.00.00.0280.01.01.080.0
09138.011.0112.042.00.00.00.01.00.00.01.00.047.07.023.08.0
1061.050.049.025.08.03.01.06.027.046.031.032.014.014.010.013.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.787-0.2450.584-0.7780.73-0.413-0.87-0.3540.464-0.2450.299-0.354-0.413-0.6160.137-1.993
020.514-0.9711.328-0.354-0.057-2.892-0.6930.2370.025-1.0841.002-0.476-0.693-1.3570.064-1.733
03-0.616-2.8921.25-2.892-0.971-2.892-0.616-2.8920.464-2.3451.804-1.211-1.084-4.1950.875-4.195
04-2.345-2.8920.987-4.195-4.195-4.195-1.733-4.195-0.245-0.872.409-1.733-4.195-4.195-0.971-4.195
05-1.084-0.616-4.195-4.195-1.084-1.993-4.195-4.1952.2351.531-1.733-1.527-2.892-2.892-2.345-4.195
06-4.195-4.195-4.1952.306-4.195-4.195-4.1951.669-4.195-4.195-4.195-1.357-4.195-4.195-4.195-1.527
07-4.195-4.195-4.195-4.195-4.195-4.195-4.195-4.195-4.195-4.195-4.195-4.195-2.345-0.015-2.3452.684
08-2.892-4.195-4.195-2.892-0.195-4.195-4.195-1.733-2.345-4.195-4.195-4.1952.427-2.892-2.8921.178
091.721-0.7781.5130.538-4.195-4.195-4.195-2.892-4.195-4.195-2.892-4.1950.649-1.211-0.057-1.084
100.9080.7110.6910.025-1.084-1.993-2.892-1.3570.1010.6280.2370.269-0.543-0.543-0.87-0.616