Model info
| Transcription factor | Pitx1 | ||||||||
| Model | PITX1_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dRGGATTAdv | ||||||||
| Best auROC (human) | 0.529 | ||||||||
| Best auROC (mouse) | 0.875 | ||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | 4 | ||||||||
| Aligned words | 196 | ||||||||
| TF family | Paired-related HD factors {3.1.3} | ||||||||
| TF subfamily | PITX {3.1.3.19} | ||||||||
| MGI | MGI:107374 | ||||||||
| EntrezGene | GeneID:18740 (SSTAR profile) | ||||||||
| UniProt ID | PITX1_MOUSE | ||||||||
| UniProt AC | P70314 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Pitx1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 94.0 | 10.0 | 62.0 | 30.0 |
| 02 | 52.0 | 0.0 | 114.0 | 30.0 |
| 03 | 31.0 | 0.0 | 165.0 | 0.0 |
| 04 | 3.0 | 0.0 | 192.0 | 1.0 |
| 05 | 133.0 | 63.0 | 0.0 | 0.0 |
| 06 | 0.0 | 2.0 | 0.0 | 194.0 |
| 07 | 4.0 | 4.0 | 1.0 | 187.0 |
| 08 | 141.0 | 1.0 | 5.0 | 49.0 |
| 09 | 85.0 | 10.0 | 76.0 | 25.0 |
| 10 | 38.0 | 76.0 | 57.0 | 25.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.639 | -1.492 | 0.23 | -0.474 |
| 02 | 0.058 | -3.641 | 0.829 | -0.474 |
| 03 | -0.443 | -3.641 | 1.196 | -3.641 |
| 04 | -2.455 | -3.641 | 1.346 | -3.077 |
| 05 | 0.982 | 0.245 | -3.641 | -3.641 |
| 06 | -3.641 | -2.719 | -3.641 | 1.356 |
| 07 | -2.247 | -2.247 | -3.077 | 1.32 |
| 08 | 1.04 | -3.077 | -2.075 | 0.0 |
| 09 | 0.54 | -1.492 | 0.43 | -0.648 |
| 10 | -0.247 | 0.43 | 0.148 | -0.648 |