Transcription factor | Pitx2 | ||||||||
Model | PITX2_MOUSE.H11MO.0.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | Integrative | ||||||||
Model release | HOCOMOCOv9 | ||||||||
Model length | 10 | ||||||||
Quality | D | ||||||||
Motif rank | 0 | ||||||||
Consensus | YKGGATTWvh | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 17 | ||||||||
TF family | Paired-related HD factors {3.1.3} | ||||||||
TF subfamily | PITX {3.1.3.19} | ||||||||
MGI | MGI:109340 | ||||||||
EntrezGene | GeneID:18741 (SSTAR profile) | ||||||||
UniProt ID | PITX2_MOUSE | ||||||||
UniProt AC | P97474 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Pitx2 expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 0.95 | 4.012 | 2.957 | 9.081 |
02 | 1.901 | 0.95 | 8.025 | 6.124 |
03 | 2.006 | 0.0 | 14.043 | 0.95 |
04 | 0.0 | 0.0 | 17.0 | 0.0 |
05 | 14.043 | 2.957 | 0.0 | 0.0 |
06 | 0.0 | 0.0 | 0.0 | 17.0 |
07 | 0.0 | 0.0 | 0.95 | 16.05 |
08 | 11.932 | 0.95 | 0.0 | 4.118 |
09 | 6.969 | 5.174 | 3.801 | 1.056 |
10 | 6.151 | 3.3 | 2.138 | 5.411 |
A | C | G | T | |
---|---|---|---|---|
01 | -1.095 | -0.049 | -0.302 | 0.68 |
02 | -0.642 | -1.095 | 0.566 | 0.321 |
03 | -0.602 | -1.946 | 1.09 | -1.095 |
04 | -1.946 | -1.946 | 1.273 | -1.946 |
05 | 1.09 | -0.302 | -1.946 | -1.946 |
06 | -1.946 | -1.946 | -1.946 | 1.273 |
07 | -1.946 | -1.946 | -1.095 | 1.218 |
08 | 0.936 | -1.095 | -1.946 | -0.027 |
09 | 0.437 | 0.171 | -0.095 | -1.033 |
10 | 0.324 | -0.213 | -0.555 | 0.21 |