Transcription factor | PKNOX1 (GeneCards) | ||||||||
Model | PKNX1_HUMAN.H11MO.0.B | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 11 | ||||||||
Quality | B | ||||||||
Motif rank | 0 | ||||||||
Consensus | WGAbKGRCRSv | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | 0.967 | ||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | 19 | ||||||||
Aligned words | 480 | ||||||||
TF family | TALE-type homeo domain factors {3.1.4} | ||||||||
TF subfamily | PKNOX {3.1.4.5} | ||||||||
HGNC | HGNC:9022 | ||||||||
EntrezGene | GeneID:5316 (SSTAR profile) | ||||||||
UniProt ID | PKNX1_HUMAN | ||||||||
UniProt AC | P55347 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | PKNOX1 expression | ||||||||
ReMap ChIP-seq dataset list | PKNOX1 datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 71.0 | 43.0 | 50.0 | 316.0 |
02 | 20.0 | 25.0 | 430.0 | 5.0 |
03 | 456.0 | 6.0 | 13.0 | 5.0 |
04 | 11.0 | 129.0 | 159.0 | 181.0 |
05 | 49.0 | 29.0 | 55.0 | 347.0 |
06 | 11.0 | 2.0 | 462.0 | 5.0 |
07 | 299.0 | 3.0 | 174.0 | 4.0 |
08 | 13.0 | 449.0 | 2.0 | 16.0 |
09 | 302.0 | 25.0 | 104.0 | 49.0 |
10 | 26.0 | 56.0 | 353.0 | 45.0 |
11 | 71.0 | 169.0 | 195.0 | 45.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.516 | -1.004 | -0.858 | 0.96 |
02 | -1.73 | -1.521 | 1.267 | -2.922 |
03 | 1.326 | -2.78 | -2.123 | -2.922 |
04 | -2.271 | 0.071 | 0.278 | 0.407 |
05 | -0.877 | -1.381 | -0.765 | 1.053 |
06 | -2.271 | -3.535 | 1.339 | -2.922 |
07 | 0.905 | -3.287 | 0.368 | -3.088 |
08 | -2.123 | 1.31 | -3.535 | -1.936 |
09 | 0.915 | -1.521 | -0.141 | -0.877 |
10 | -1.485 | -0.748 | 1.071 | -0.96 |
11 | -0.516 | 0.339 | 0.481 | -0.96 |