We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPKNOX1
(GeneCards)
ModelPKNX1_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
B
Motif rank
0
ConsensusWGAbKGRCRSv
Best auROC (human)
Best auROC (mouse)0.967
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)19
Aligned words480
TF familyTALE-type homeo domain factors {3.1.4}
TF subfamilyPKNOX {3.1.4.5}
HGNCHGNC:9022
EntrezGeneGeneID:5316
(SSTAR profile)
UniProt IDPKNX1_HUMAN
UniProt ACP55347
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.543395
0.0005 5.438745
0.0001 7.25427
GTEx tissue expression atlas PKNOX1 expression
ReMap ChIP-seq dataset list PKNOX1 datasets
Motifs in JASPAR
MA0782.1 (PKNOX1; Homo sapiens)
PCM
ACGT
0171.043.050.0316.0
0220.025.0430.05.0
03456.06.013.05.0
0411.0129.0159.0181.0
0549.029.055.0347.0
0611.02.0462.05.0
07299.03.0174.04.0
0813.0449.02.016.0
09302.025.0104.049.0
1026.056.0353.045.0
1171.0169.0195.045.0
PWM
ACGT
01-0.516-1.004-0.8580.96
02-1.73-1.5211.267-2.922
031.326-2.78-2.123-2.922
04-2.2710.0710.2780.407
05-0.877-1.381-0.7651.053
06-2.271-3.5351.339-2.922
070.905-3.2870.368-3.088
08-2.1231.31-3.535-1.936
090.915-1.521-0.141-0.877
10-1.485-0.7481.071-0.96
11-0.5160.3390.481-0.96