We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPknox1
ModelPKNX1_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusbWGAbKGRCRKv
Best auROC (human)
Best auROC (mouse)0.973
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)19
Aligned words479
TF familyTALE-type homeo domain factors {3.1.4}
TF subfamilyPKNOX {3.1.4.5}
MGIMGI:1201409
EntrezGeneGeneID:18771
(SSTAR profile)
UniProt IDPKNX1_MOUSE
UniProt ACO70477
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.12136
0.0005 10.91422
0.0001 14.577449999999999
GTEx tissue expression atlas Pknox1 expression
Motifs in JASPAR
MA0782.1 (PKNOX1; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0113.07.013.033.09.020.016.0116.034.018.019.087.08.04.08.070.0
023.01.058.02.06.02.036.05.02.00.053.01.015.04.0281.06.0
0322.04.00.00.05.01.01.00.0418.01.07.02.014.00.00.00.0
0422.0129.0136.0172.01.02.01.02.01.03.02.02.00.00.02.00.0
055.00.00.019.023.03.034.074.08.022.012.099.05.07.033.0131.0
061.00.039.01.02.00.029.01.05.00.073.01.01.03.0318.01.0
073.00.06.00.03.00.00.00.0270.01.0186.02.01.00.01.02.0
088.0252.06.011.00.00.00.01.07.0174.01.011.00.04.00.00.0
094.03.07.01.0277.014.0109.030.03.03.01.00.05.01.015.02.0
1024.027.0209.029.012.04.04.01.05.012.079.036.09.07.014.03.0
1110.08.026.06.07.013.017.013.048.0119.0116.023.08.019.030.012.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.809-1.404-0.8090.104-1.164-0.389-0.6071.3530.134-0.492-0.4391.067-1.277-1.925-1.2770.85
02-2.184-3.0780.663-2.534-1.55-2.5340.191-1.72-2.534-4.3580.574-3.078-0.67-1.9252.236-1.55
03-0.295-1.925-4.358-4.358-1.72-3.078-3.078-4.3582.633-3.078-1.404-2.534-0.737-4.358-4.358-4.358
04-0.2951.4591.5121.746-3.078-2.534-3.078-2.534-3.078-2.184-2.534-2.534-4.358-4.358-2.534-4.358
05-1.72-4.358-4.358-0.439-0.252-2.1840.1340.906-1.277-0.295-0.8871.195-1.72-1.4040.1041.475
06-3.078-4.3580.27-3.078-2.534-4.358-0.023-3.078-1.72-4.3580.892-3.078-3.078-2.1842.36-3.078
07-2.184-4.358-1.55-4.358-2.184-4.358-4.358-4.3582.196-3.0781.824-2.534-3.078-4.358-3.078-2.534
08-1.2772.127-1.55-0.971-4.358-4.358-4.358-3.078-1.4041.758-3.078-0.971-4.358-1.925-4.358-4.358
09-1.925-2.184-1.404-3.0782.222-0.7371.2910.01-2.184-2.184-3.078-4.358-1.72-3.078-0.67-2.534
10-0.21-0.0941.941-0.023-0.887-1.925-1.925-3.078-1.72-0.8870.9710.191-1.164-1.404-0.737-2.184
11-1.063-1.277-0.131-1.55-1.404-0.809-0.548-0.8090.4761.3791.353-0.252-1.277-0.4390.01-0.887