Model info
| Transcription factor | Pknox1 | ||||||||
| Model | PKNX1_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | WGAbKGRCRSv | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.967 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 19 | ||||||||
| Aligned words | 480 | ||||||||
| TF family | TALE-type homeo domain factors {3.1.4} | ||||||||
| TF subfamily | PKNOX {3.1.4.5} | ||||||||
| MGI | MGI:1201409 | ||||||||
| EntrezGene | GeneID:18771 (SSTAR profile) | ||||||||
| UniProt ID | PKNX1_MOUSE | ||||||||
| UniProt AC | O70477 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Pknox1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 71.0 | 43.0 | 50.0 | 316.0 |
| 02 | 20.0 | 25.0 | 430.0 | 5.0 |
| 03 | 456.0 | 6.0 | 13.0 | 5.0 |
| 04 | 11.0 | 129.0 | 159.0 | 181.0 |
| 05 | 49.0 | 29.0 | 55.0 | 347.0 |
| 06 | 11.0 | 2.0 | 462.0 | 5.0 |
| 07 | 299.0 | 3.0 | 174.0 | 4.0 |
| 08 | 13.0 | 449.0 | 2.0 | 16.0 |
| 09 | 302.0 | 25.0 | 104.0 | 49.0 |
| 10 | 26.0 | 56.0 | 353.0 | 45.0 |
| 11 | 71.0 | 169.0 | 195.0 | 45.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.516 | -1.004 | -0.858 | 0.96 |
| 02 | -1.73 | -1.521 | 1.267 | -2.922 |
| 03 | 1.326 | -2.78 | -2.123 | -2.922 |
| 04 | -2.271 | 0.071 | 0.278 | 0.407 |
| 05 | -0.877 | -1.381 | -0.765 | 1.053 |
| 06 | -2.271 | -3.535 | 1.339 | -2.922 |
| 07 | 0.905 | -3.287 | 0.368 | -3.088 |
| 08 | -2.123 | 1.31 | -3.535 | -1.936 |
| 09 | 0.915 | -1.521 | -0.141 | -0.877 |
| 10 | -1.485 | -0.748 | 1.071 | -0.96 |
| 11 | -0.516 | 0.339 | 0.481 | -0.96 |