Transcription factor | Plag1 | ||||||||
Model | PLAG1_MOUSE.H11MO.0.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | Integrative | ||||||||
Model release | HOCOMOCOv9 | ||||||||
Model length | 17 | ||||||||
Quality | D | ||||||||
Motif rank | 0 | ||||||||
Consensus | RGGGGSMhndRdMGGGK | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 25 | ||||||||
TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
TF subfamily | PLAG factors {2.3.3.25} | ||||||||
MGI | MGI:1891916 | ||||||||
EntrezGene | GeneID:56711 (SSTAR profile) | ||||||||
UniProt ID | PLAG1_MOUSE | ||||||||
UniProt AC | Q9QYE0 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Plag1 expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 5.5 | 0.5 | 16.5 | 2.5 |
02 | 5.0 | 0.0 | 20.0 | 0.0 |
03 | 10.0 | 0.0 | 15.0 | 0.0 |
04 | 0.0 | 0.0 | 25.0 | 0.0 |
05 | 0.0 | 8.0 | 17.0 | 0.0 |
06 | 1.0 | 14.0 | 7.0 | 3.0 |
07 | 13.0 | 9.0 | 2.0 | 1.0 |
08 | 5.0 | 8.0 | 3.0 | 9.0 |
09 | 5.0 | 8.0 | 6.0 | 6.0 |
10 | 11.0 | 2.0 | 5.0 | 7.0 |
11 | 8.0 | 6.0 | 11.0 | 0.0 |
12 | 4.0 | 2.0 | 12.0 | 7.0 |
13 | 17.0 | 4.0 | 3.0 | 1.0 |
14 | 2.0 | 0.0 | 20.0 | 3.0 |
15 | 1.0 | 0.0 | 24.0 | 0.0 |
16 | 0.0 | 0.0 | 25.0 | 0.0 |
17 | 2.0 | 1.0 | 17.0 | 5.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.112 | -1.688 | 0.897 | -0.758 |
02 | -0.195 | -2.171 | 1.081 | -2.171 |
03 | 0.426 | -2.171 | 0.807 | -2.171 |
04 | -2.171 | -2.171 | 1.297 | -2.171 |
05 | -2.171 | 0.222 | 0.926 | -2.171 |
06 | -1.363 | 0.741 | 0.101 | -0.617 |
07 | 0.671 | 0.329 | -0.922 | -1.363 |
08 | -0.195 | 0.222 | -0.617 | 0.329 |
09 | -0.195 | 0.222 | -0.036 | -0.036 |
10 | 0.515 | -0.922 | -0.195 | 0.101 |
11 | 0.222 | -0.036 | 0.515 | -2.171 |
12 | -0.384 | -0.922 | 0.596 | 0.101 |
13 | 0.926 | -0.384 | -0.617 | -1.363 |
14 | -0.922 | -2.171 | 1.081 | -0.617 |
15 | -1.363 | -2.171 | 1.257 | -2.171 |
16 | -2.171 | -2.171 | 1.297 | -2.171 |
17 | -0.922 | -1.363 | 0.926 | -0.195 |