We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPLAGL1
(GeneCards)
ModelPLAL1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length10
Quality
D
Motif rank
0
ConsensusvRGGGGGCCY
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words12
TF familyMore than 3 adjacent zinc finger factors {2.3.3}
TF subfamilyPLAG factors {2.3.3.25}
HGNCHGNC:9046
EntrezGeneGeneID:5325
(SSTAR profile)
UniProt IDPLAL1_HUMAN
UniProt ACQ9UM63
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.441825
0.0005 5.1847449999999995
0.0001 6.746360000000001
GTEx tissue expression atlas PLAGL1 expression
ReMap ChIP-seq dataset list PLAGL1 datasets
Motifs in JASPAR
PCM
ACGT
012.1177.2942.1170.471
024.1150.07.0620.823
030.00.09.5312.469
041.6460.010.3540.0
050.8230.011.1770.0
060.00.012.00.0
070.00.012.00.0
080.011.1770.00.823
090.82310.3540.00.823
100.8237.0621.6462.469
PWM
ACGT
01-0.2790.782-0.279-1.198
020.268-1.7630.752-0.919
03-1.763-1.7631.031-0.159
04-0.468-1.7631.109-1.763
05-0.919-1.7631.181-1.763
06-1.763-1.7631.249-1.763
07-1.763-1.7631.249-1.763
08-1.7631.181-1.763-0.919
09-0.9191.109-1.763-0.919
10-0.9190.752-0.468-0.159