Model info
| Transcription factor | Pou2f1 | ||||||||
| Model | PO2F1_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 16 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | RnKbvhATGSAAWhRh | ||||||||
| Best auROC (human) | 0.766 | ||||||||
| Best auROC (mouse) | 0.669 | ||||||||
| Peak sets in benchmark (human) | 15 | ||||||||
| Peak sets in benchmark (mouse) | 14 | ||||||||
| Aligned words | 134 | ||||||||
| TF family | POU domain factors {3.1.10} | ||||||||
| TF subfamily | POU2 (Oct-1/2-like factors) {3.1.10.2} | ||||||||
| MGI | MGI:101898 | ||||||||
| EntrezGene | GeneID:18986 (SSTAR profile) | ||||||||
| UniProt ID | PO2F1_MOUSE | ||||||||
| UniProt AC | P25425 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Pou2f1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 85.0 | 15.0 | 21.0 | 13.0 |
| 02 | 58.0 | 23.0 | 23.0 | 30.0 |
| 03 | 10.0 | 6.0 | 40.0 | 78.0 |
| 04 | 11.0 | 49.0 | 45.0 | 29.0 |
| 05 | 40.0 | 18.0 | 63.0 | 13.0 |
| 06 | 66.0 | 22.0 | 5.0 | 41.0 |
| 07 | 127.0 | 5.0 | 1.0 | 1.0 |
| 08 | 5.0 | 2.0 | 1.0 | 126.0 |
| 09 | 8.0 | 0.0 | 126.0 | 0.0 |
| 10 | 2.0 | 62.0 | 57.0 | 13.0 |
| 11 | 123.0 | 3.0 | 4.0 | 4.0 |
| 12 | 110.0 | 5.0 | 17.0 | 2.0 |
| 13 | 72.0 | 9.0 | 7.0 | 46.0 |
| 14 | 16.0 | 53.0 | 8.0 | 57.0 |
| 15 | 81.0 | 19.0 | 23.0 | 11.0 |
| 16 | 62.0 | 11.0 | 10.0 | 51.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.91 | -0.761 | -0.446 | -0.892 |
| 02 | 0.534 | -0.36 | -0.36 | -0.106 |
| 03 | -1.129 | -1.57 | 0.172 | 0.825 |
| 04 | -1.044 | 0.369 | 0.286 | -0.139 |
| 05 | 0.172 | -0.591 | 0.615 | -0.892 |
| 06 | 0.661 | -0.402 | -1.719 | 0.196 |
| 07 | 1.306 | -1.719 | -2.748 | -2.748 |
| 08 | -1.719 | -2.377 | -2.748 | 1.299 |
| 09 | -1.326 | -3.345 | 1.299 | -3.345 |
| 10 | -2.377 | 0.599 | 0.517 | -0.892 |
| 11 | 1.275 | -2.107 | -1.894 | -1.894 |
| 12 | 1.164 | -1.719 | -0.645 | -2.377 |
| 13 | 0.746 | -1.223 | -1.44 | 0.307 |
| 14 | -0.701 | 0.446 | -1.326 | 0.517 |
| 15 | 0.862 | -0.541 | -0.36 | -1.044 |
| 16 | 0.599 | -1.044 | -1.129 | 0.408 |