We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPOU5F1
(GeneCards)
ModelPO5F1_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length18
Quality
A
Motif rank
0
ConsensusnbYWTTSWhATGYARRhn
Best auROC (human)0.986
Best auROC (mouse)0.985
Peak sets in benchmark (human)44
Peak sets in benchmark (mouse)119
Aligned words501
TF familyPOU domain factors {3.1.10}
TF subfamilyPOU5 (Oct-3/4-like factors) {3.1.10.5}
HGNCHGNC:9221
EntrezGeneGeneID:5460
(SSTAR profile)
UniProt IDPO5F1_HUMAN
UniProt ACQ01860
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.11471
0.0005 11.283760000000001
0.0001 15.82891
GTEx tissue expression atlas POU5F1 expression
ReMap ChIP-seq dataset list POU5F1 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
015.031.029.015.017.057.07.041.00.069.036.038.010.076.027.038.0
020.024.01.07.014.0128.06.085.05.050.010.034.012.075.019.026.0
0314.01.02.014.0124.012.02.0139.018.01.03.014.047.03.04.098.0
043.03.06.0191.02.01.00.014.01.01.03.06.06.05.010.0244.0
055.00.00.07.02.01.01.06.02.01.02.014.021.02.014.0418.0
063.07.015.05.00.01.02.01.09.05.01.02.039.0111.0277.018.0
0717.00.01.033.064.00.01.059.057.02.04.0232.08.02.02.014.0
0830.015.020.081.01.00.00.03.02.00.03.03.027.0121.029.0161.0
0958.00.00.02.0129.01.00.06.050.00.02.00.0236.01.07.04.0
102.01.00.0470.00.00.00.02.01.00.00.08.00.00.00.012.0
110.00.03.00.00.00.00.01.00.00.00.00.01.00.0453.038.0
120.01.00.00.00.00.00.00.06.0332.048.070.02.031.01.05.0
134.01.00.03.0284.03.023.054.037.00.02.010.057.00.03.015.0
14216.016.0103.047.04.00.00.00.03.012.05.08.065.02.012.03.0
15254.04.020.010.026.02.00.02.095.07.012.06.021.011.016.010.0
1662.038.049.0247.011.03.01.09.017.015.07.09.01.06.04.017.0
1725.014.022.030.023.020.07.012.017.018.012.014.049.030.0111.092.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.7620.0-0.066-0.713-0.5910.603-1.4470.277-4.3930.7930.1480.201-1.1060.889-0.1360.201
02-4.393-0.252-3.119-1.447-0.781.409-1.5921.001-1.7620.473-1.1060.091-0.930.876-0.482-0.174
03-0.78-3.119-2.576-0.781.377-0.93-2.5761.491-0.535-3.119-2.226-0.780.412-2.226-1.9681.142
04-2.226-2.226-1.5921.808-2.576-3.119-4.393-0.78-3.119-3.119-2.226-1.592-1.592-1.762-1.1062.052
05-1.762-4.393-4.393-1.447-2.576-3.119-3.119-1.592-2.576-3.119-2.576-0.78-0.384-2.576-0.782.59
06-2.226-1.447-0.713-1.762-4.393-3.119-2.576-3.119-1.207-1.762-3.119-2.5760.2271.2672.179-0.535
07-0.591-4.393-3.1190.0620.719-4.393-3.1190.6380.603-2.576-1.9682.002-1.32-2.576-2.576-0.78
08-0.032-0.713-0.4310.953-3.119-4.393-4.393-2.226-2.576-4.393-2.226-2.226-0.1361.353-0.0661.637
090.621-4.393-4.393-2.5761.416-3.119-4.393-1.5920.473-4.393-2.576-4.3932.019-3.119-1.447-1.968
10-2.576-3.119-4.3932.707-4.393-4.393-4.393-2.576-3.119-4.393-4.393-1.32-4.393-4.393-4.393-0.93
11-4.393-4.393-2.226-4.393-4.393-4.393-4.393-3.119-4.393-4.393-4.393-4.393-3.119-4.3932.670.201
12-4.393-3.119-4.393-4.393-4.393-4.393-4.393-4.393-1.5922.360.4330.808-2.5760.0-3.119-1.762
13-1.968-3.119-4.393-2.2262.204-2.226-0.2940.550.175-4.393-2.576-1.1060.603-4.393-2.226-0.713
141.931-0.651.1920.412-1.968-4.393-4.393-4.393-2.226-0.93-1.762-1.320.734-2.576-0.93-2.226
152.092-1.968-0.431-1.106-0.174-2.576-4.393-2.5761.112-1.447-0.93-1.592-0.384-1.014-0.65-1.106
160.6870.2010.4532.065-1.014-2.226-3.119-1.207-0.591-0.713-1.447-1.207-3.119-1.592-1.968-0.591
17-0.212-0.78-0.338-0.032-0.294-0.431-1.447-0.93-0.591-0.535-0.93-0.780.453-0.0321.2671.08