We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPOU5F1
(GeneCards)
ModelPO5F1_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
A
Motif rank
0
ConsensusbYWTTvWhATGYARAh
Best auROC (human)0.977
Best auROC (mouse)0.982
Peak sets in benchmark (human)44
Peak sets in benchmark (mouse)119
Aligned words501
TF familyPOU domain factors {3.1.10}
TF subfamilyPOU5 (Oct-3/4-like factors) {3.1.10.5}
HGNCHGNC:9221
EntrezGeneGeneID:5460
(SSTAR profile)
UniProt IDPO5F1_HUMAN
UniProt ACQ01860
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.1955100000000005
0.0005 6.17716
0.0001 8.22521
GTEx tissue expression atlas POU5F1 expression
ReMap ChIP-seq dataset list POU5F1 datasets
Motifs in JASPAR
MA0142.1 (Pou5f1::Sox2; Mus musculus)
MA1115.1 (POU5F1; Homo sapiens)
PCM
ACGT
0126.0260.097.0117.0
0237.0265.040.0158.0
03195.022.020.0263.0
0410.032.012.0446.0
0536.011.014.0439.0
0652.0157.0258.033.0
07190.018.016.0276.0
0888.0125.050.0237.0
09442.010.016.032.0
107.01.08.0484.0
116.04.0461.029.0
127.0380.047.066.0
13395.010.015.080.0
14310.030.0127.033.0
15415.018.034.033.0
1680.069.061.0290.0
PWM
ACGT
01-1.5250.726-0.25-0.065
02-1.1890.745-1.1140.232
030.44-1.681-1.770.737
04-2.394-1.328-2.2341.263
05-1.215-2.311-2.0961.247
06-0.860.2250.718-1.298
070.415-1.868-1.9750.785
08-0.3460.0-0.8980.634
091.254-2.394-1.975-1.328
10-2.694-3.903-2.5841.345
11-2.819-3.1261.296-1.421
12-2.6941.104-0.958-0.628
131.142-2.394-2.034-0.439
140.901-1.3890.016-1.298
151.191-1.868-1.27-1.298
16-0.439-0.584-0.7050.835