Model info
| Transcription factor | POU5F1 (GeneCards) | ||||||||
| Model | PO5F1_HUMAN.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | dnATGCAvWb | ||||||||
| Best auROC (human) | 0.888 | ||||||||
| Best auROC (mouse) | 0.876 | ||||||||
| Peak sets in benchmark (human) | 44 | ||||||||
| Peak sets in benchmark (mouse) | 119 | ||||||||
| Aligned words | 485 | ||||||||
| TF family | POU domain factors {3.1.10} | ||||||||
| TF subfamily | POU5 (Oct-3/4-like factors) {3.1.10.5} | ||||||||
| HGNC | HGNC:9221 | ||||||||
| EntrezGene | GeneID:5460 (SSTAR profile) | ||||||||
| UniProt ID | PO5F1_HUMAN | ||||||||
| UniProt AC | Q01860 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | POU5F1 expression | ||||||||
| ReMap ChIP-seq dataset list | POU5F1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 216.0 | 25.0 | 84.0 | 159.0 |
| 02 | 144.0 | 144.0 | 43.0 | 153.0 |
| 03 | 440.0 | 28.0 | 3.0 | 13.0 |
| 04 | 26.0 | 7.0 | 20.0 | 431.0 |
| 05 | 7.0 | 10.0 | 464.0 | 3.0 |
| 06 | 7.0 | 422.0 | 46.0 | 9.0 |
| 07 | 407.0 | 13.0 | 40.0 | 24.0 |
| 08 | 194.0 | 137.0 | 109.0 | 44.0 |
| 09 | 369.0 | 34.0 | 39.0 | 42.0 |
| 10 | 81.0 | 86.0 | 100.0 | 217.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.574 | -1.53 | -0.359 | 0.27 |
| 02 | 0.172 | 0.172 | -1.012 | 0.232 |
| 03 | 1.282 | -1.423 | -3.294 | -2.131 |
| 04 | -1.493 | -2.663 | -1.738 | 1.261 |
| 05 | -2.663 | -2.362 | 1.335 | -3.294 |
| 06 | -2.663 | 1.24 | -0.947 | -2.453 |
| 07 | 1.204 | -2.131 | -1.082 | -1.568 |
| 08 | 0.467 | 0.123 | -0.103 | -0.99 |
| 09 | 1.106 | -1.238 | -1.106 | -1.035 |
| 10 | -0.395 | -0.336 | -0.188 | 0.579 |