We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPOU5F1
(GeneCards)
ModelPO5F1_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
1
ConsensusdnATGCAvWb
Best auROC (human)0.888
Best auROC (mouse)0.876
Peak sets in benchmark (human)44
Peak sets in benchmark (mouse)119
Aligned words485
TF familyPOU domain factors {3.1.10}
TF subfamilyPOU5 (Oct-3/4-like factors) {3.1.10.5}
HGNCHGNC:9221
EntrezGeneGeneID:5460
(SSTAR profile)
UniProt IDPO5F1_HUMAN
UniProt ACQ01860
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.58802
0.0005 6.21744
0.0001 7.95363
GTEx tissue expression atlas POU5F1 expression
ReMap ChIP-seq dataset list POU5F1 datasets
Motifs in JASPAR
PCM
ACGT
01216.025.084.0159.0
02144.0144.043.0153.0
03440.028.03.013.0
0426.07.020.0431.0
057.010.0464.03.0
067.0422.046.09.0
07407.013.040.024.0
08194.0137.0109.044.0
09369.034.039.042.0
1081.086.0100.0217.0
PWM
ACGT
010.574-1.53-0.3590.27
020.1720.172-1.0120.232
031.282-1.423-3.294-2.131
04-1.493-2.663-1.7381.261
05-2.663-2.3621.335-3.294
06-2.6631.24-0.947-2.453
071.204-2.131-1.082-1.568
080.4670.123-0.103-0.99
091.106-1.238-1.106-1.035
10-0.395-0.336-0.1880.579