Model info
| Transcription factor | Pou5f1 | ||||||||
| Model | PO5F1_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 16 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bYWTTSWhATGYWRAW | ||||||||
| Best auROC (human) | 0.98 | ||||||||
| Best auROC (mouse) | 0.985 | ||||||||
| Peak sets in benchmark (human) | 44 | ||||||||
| Peak sets in benchmark (mouse) | 119 | ||||||||
| Aligned words | 499 | ||||||||
| TF family | POU domain factors {3.1.10} | ||||||||
| TF subfamily | POU5 (Oct-3/4-like factors) {3.1.10.5} | ||||||||
| MGI | MGI:101893 | ||||||||
| EntrezGene | GeneID:18999 (SSTAR profile) | ||||||||
| UniProt ID | PO5F1_MOUSE | ||||||||
| UniProt AC | P20263 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Pou5f1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 27.0 | 246.0 | 115.0 | 111.0 |
| 02 | 30.0 | 259.0 | 23.0 | 187.0 |
| 03 | 263.0 | 9.0 | 8.0 | 219.0 |
| 04 | 6.0 | 10.0 | 7.0 | 476.0 |
| 05 | 24.0 | 3.0 | 29.0 | 443.0 |
| 06 | 49.0 | 114.0 | 301.0 | 35.0 |
| 07 | 163.0 | 8.0 | 7.0 | 321.0 |
| 08 | 113.0 | 110.0 | 71.0 | 205.0 |
| 09 | 431.0 | 5.0 | 14.0 | 49.0 |
| 10 | 1.0 | 2.0 | 1.0 | 495.0 |
| 11 | 3.0 | 0.0 | 460.0 | 36.0 |
| 12 | 10.0 | 362.0 | 35.0 | 92.0 |
| 13 | 335.0 | 9.0 | 9.0 | 146.0 |
| 14 | 348.0 | 20.0 | 81.0 | 50.0 |
| 15 | 452.0 | 9.0 | 21.0 | 17.0 |
| 16 | 95.0 | 38.0 | 69.0 | 297.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.487 | 0.673 | -0.08 | -0.115 |
| 02 | -1.387 | 0.724 | -1.638 | 0.401 |
| 03 | 0.739 | -2.482 | -2.582 | 0.557 |
| 04 | -2.817 | -2.392 | -2.692 | 1.33 |
| 05 | -1.598 | -3.323 | -1.419 | 1.258 |
| 06 | -0.916 | -0.089 | 0.874 | -1.24 |
| 07 | 0.265 | -2.582 | -2.692 | 0.938 |
| 08 | -0.098 | -0.124 | -0.554 | 0.492 |
| 09 | 1.231 | -2.959 | -2.094 | -0.916 |
| 10 | -3.901 | -3.571 | -3.901 | 1.369 |
| 11 | -3.323 | -4.398 | 1.296 | -1.213 |
| 12 | -2.392 | 1.057 | -1.24 | -0.3 |
| 13 | 0.98 | -2.482 | -2.482 | 0.156 |
| 14 | 1.018 | -1.768 | -0.425 | -0.896 |
| 15 | 1.278 | -2.482 | -1.723 | -1.918 |
| 16 | -0.269 | -1.161 | -0.582 | 0.86 |