We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPou5f1
ModelPO5F1_MOUSE.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
A
Motif rank
1
ConsensushWTGCWRAh
Best auROC (human)0.873
Best auROC (mouse)0.877
Peak sets in benchmark (human)44
Peak sets in benchmark (mouse)119
Aligned words498
TF familyPOU domain factors {3.1.10}
TF subfamilyPOU5 (Oct-3/4-like factors) {3.1.10.5}
MGIMGI:101893
EntrezGeneGeneID:18999
(SSTAR profile)
UniProt IDPO5F1_MOUSE
UniProt ACP20263
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.81057
0.0005 6.38888
0.0001 7.46364
GTEx tissue expression atlas Pou5f1 expression
Motifs in JASPAR
PCM
ACGT
01143.0101.039.0215.0
02336.040.036.086.0
035.01.027.0465.0
045.02.0362.0129.0
054.0407.046.041.0
06322.08.00.0168.0
07321.019.0131.027.0
08436.06.040.016.0
0983.082.070.0263.0
PWM
ACGT
010.137-0.206-1.1340.541
020.985-1.11-1.211-0.364
03-2.957-3.9-1.4851.309
04-2.957-3.5691.0590.035
05-3.1221.176-0.975-1.086
060.943-2.58-4.3970.296
070.94-1.8140.05-1.485
081.244-2.815-1.11-1.971
09-0.399-0.411-0.5660.741