Model info
| Transcription factor | Pou5f1 | ||||||||
| Model | PO5F1_MOUSE.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 9 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | hWTGCWRAh | ||||||||
| Best auROC (human) | 0.873 | ||||||||
| Best auROC (mouse) | 0.877 | ||||||||
| Peak sets in benchmark (human) | 44 | ||||||||
| Peak sets in benchmark (mouse) | 119 | ||||||||
| Aligned words | 498 | ||||||||
| TF family | POU domain factors {3.1.10} | ||||||||
| TF subfamily | POU5 (Oct-3/4-like factors) {3.1.10.5} | ||||||||
| MGI | MGI:101893 | ||||||||
| EntrezGene | GeneID:18999 (SSTAR profile) | ||||||||
| UniProt ID | PO5F1_MOUSE | ||||||||
| UniProt AC | P20263 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Pou5f1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 143.0 | 101.0 | 39.0 | 215.0 |
| 02 | 336.0 | 40.0 | 36.0 | 86.0 |
| 03 | 5.0 | 1.0 | 27.0 | 465.0 |
| 04 | 5.0 | 2.0 | 362.0 | 129.0 |
| 05 | 4.0 | 407.0 | 46.0 | 41.0 |
| 06 | 322.0 | 8.0 | 0.0 | 168.0 |
| 07 | 321.0 | 19.0 | 131.0 | 27.0 |
| 08 | 436.0 | 6.0 | 40.0 | 16.0 |
| 09 | 83.0 | 82.0 | 70.0 | 263.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.137 | -0.206 | -1.134 | 0.541 |
| 02 | 0.985 | -1.11 | -1.211 | -0.364 |
| 03 | -2.957 | -3.9 | -1.485 | 1.309 |
| 04 | -2.957 | -3.569 | 1.059 | 0.035 |
| 05 | -3.122 | 1.176 | -0.975 | -1.086 |
| 06 | 0.943 | -2.58 | -4.397 | 0.296 |
| 07 | 0.94 | -1.814 | 0.05 | -1.485 |
| 08 | 1.244 | -2.815 | -1.11 | -1.971 |
| 09 | -0.399 | -0.411 | -0.566 | 0.741 |