Model info
| Transcription factor | POU6F2 (GeneCards) | ||||||||
| Model | PO6F2_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dhTAATTAGbh | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 1481 | ||||||||
| TF family | POU domain factors {3.1.10} | ||||||||
| TF subfamily | POU6 (Brn-5-like factors) {3.1.10.6} | ||||||||
| HGNC | HGNC:21694 | ||||||||
| EntrezGene | GeneID:11281 (SSTAR profile) | ||||||||
| UniProt ID | PO6F2_HUMAN | ||||||||
| UniProt AC | P78424 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | POU6F2 expression | ||||||||
| ReMap ChIP-seq dataset list | POU6F2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 253.544 | 228.631 | 543.228 | 272.159 |
| 02 | 412.741 | 225.17 | 196.444 | 463.208 |
| 03 | 26.634 | 30.372 | 20.486 | 1220.07 |
| 04 | 1296.898 | 0.0 | 0.664 | 0.0 |
| 05 | 1293.824 | 0.0 | 3.074 | 0.664 |
| 06 | 0.0 | 0.0 | 7.722 | 1289.84 |
| 07 | 3.738 | 0.0 | 469.756 | 824.068 |
| 08 | 1267.713 | 7.015 | 6.351 | 16.483 |
| 09 | 31.282 | 27.962 | 1220.488 | 17.83 |
| 10 | 87.073 | 572.96 | 454.053 | 183.477 |
| 11 | 236.273 | 282.95 | 166.207 | 612.132 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.245 | -0.348 | 0.513 | -0.175 |
| 02 | 0.24 | -0.363 | -0.498 | 0.355 |
| 03 | -2.44 | -2.317 | -2.684 | 1.321 |
| 04 | 1.382 | -5.204 | -4.889 | -5.204 |
| 05 | 1.379 | -5.204 | -4.205 | -4.889 |
| 06 | -5.204 | -5.204 | -3.535 | 1.376 |
| 07 | -4.077 | -5.204 | 0.369 | 0.929 |
| 08 | 1.359 | -3.612 | -3.69 | -2.882 |
| 09 | -2.289 | -2.394 | 1.321 | -2.811 |
| 10 | -1.3 | 0.566 | 0.335 | -0.566 |
| 11 | -0.315 | -0.136 | -0.664 | 0.632 |