We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPPARA
(GeneCards)
ModelPPARA_HUMAN.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
B
Motif rank
0
ConsensusnhWbYRKGbbARAGGKbMn
Best auROC (human)0.59
Best auROC (mouse)0.965
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)20
Aligned words500
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyPPAR (NR1C) {2.1.2.5}
HGNCHGNC:9232
EntrezGeneGeneID:5465
(SSTAR profile)
UniProt IDPPARA_HUMAN
UniProt ACQ07869
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.10011
0.0005 11.902160000000002
0.0001 15.628210000000001
GTEx tissue expression atlas PPARA expression
ReMap ChIP-seq dataset list PPARA datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0192.021.025.013.077.021.02.021.046.024.023.017.035.034.021.028.0
02157.011.026.056.066.04.03.027.044.05.010.012.021.011.08.039.0
0329.0107.0120.032.010.07.03.011.08.018.011.010.013.050.052.019.0
046.08.013.033.021.032.06.0123.012.030.025.0119.09.018.019.026.0
0524.00.019.05.070.04.07.07.033.04.023.03.095.06.0191.09.0
0632.00.0180.010.02.00.06.06.016.03.0177.044.02.00.020.02.0
076.03.041.02.01.01.00.01.055.07.0310.011.05.04.050.03.0
086.010.041.010.04.06.00.05.037.092.0141.0131.05.07.01.04.0
094.029.014.05.014.070.08.023.016.0108.037.022.016.073.044.017.0
1041.01.08.00.0271.06.02.01.093.00.09.01.059.06.02.00.0
11288.014.0136.026.010.01.01.01.014.01.05.01.01.00.01.00.0
12258.00.053.02.014.00.02.00.0113.00.030.00.015.02.011.00.0
1350.01.0342.07.00.00.01.01.022.00.071.03.00.00.02.00.0
142.00.070.00.00.00.01.00.015.02.0312.087.00.00.011.00.0
151.00.010.06.00.00.00.02.018.042.079.0255.01.04.019.063.0
162.014.04.00.010.023.02.011.013.062.019.014.020.0193.060.053.0
1729.08.05.03.0230.028.012.022.067.09.06.03.039.012.022.05.0
1877.0119.0112.057.020.013.04.020.08.09.09.019.07.010.07.09.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
011.072-0.392-0.22-0.860.894-0.392-2.584-0.3920.383-0.26-0.302-0.5990.1120.083-0.392-0.108
021.604-1.022-0.1810.5780.741-1.975-2.234-0.1440.339-1.77-1.114-0.938-0.392-1.022-1.3280.219
03-0.0741.2221.3360.023-1.114-1.454-2.234-1.022-1.328-0.543-1.022-1.114-0.860.4650.504-0.49
04-1.6-1.328-0.860.054-0.3920.023-1.61.361-0.938-0.04-0.221.328-1.215-0.543-0.49-0.181
05-0.26-4.4-0.49-1.770.8-1.975-1.454-1.4540.054-1.975-0.302-2.2341.104-1.61.8-1.215
060.023-4.41.741-1.114-2.584-4.4-1.6-1.6-0.658-2.2341.7240.339-2.584-4.4-0.439-2.584
07-1.6-2.2340.269-2.584-3.126-3.126-4.4-3.1260.56-1.4542.283-1.022-1.77-1.9750.465-2.234
08-1.6-1.1140.269-1.114-1.975-1.6-4.4-1.770.1671.0721.4971.424-1.77-1.454-3.126-1.975
09-1.975-0.074-0.788-1.77-0.7880.8-1.328-0.302-0.6581.2310.167-0.346-0.6580.8410.339-0.599
100.269-3.126-1.328-4.42.149-1.6-2.584-3.1261.082-4.4-1.215-3.1260.63-1.6-2.584-4.4
112.21-0.7881.461-0.181-1.114-3.126-3.126-3.126-0.788-3.126-1.77-3.126-3.126-4.4-3.126-4.4
122.1-4.40.523-2.584-0.788-4.4-2.584-4.41.276-4.4-0.04-4.4-0.721-2.584-1.022-4.4
130.465-3.1262.382-1.454-4.4-4.4-3.126-3.126-0.346-4.40.814-2.234-4.4-4.4-2.584-4.4
14-2.584-4.40.8-4.4-4.4-4.4-3.126-4.4-0.721-2.5842.291.016-4.4-4.4-1.022-4.4
15-3.126-4.4-1.114-1.6-4.4-4.4-4.4-2.584-0.5430.2930.922.088-3.126-1.975-0.490.695
16-2.584-0.788-1.975-4.4-1.114-0.302-2.584-1.022-0.860.679-0.49-0.788-0.4391.810.6460.523
17-0.074-1.328-1.77-2.2341.985-0.108-0.938-0.3460.756-1.215-1.6-2.2340.219-0.938-0.346-1.77
180.8941.3281.2680.595-0.439-0.86-1.975-0.439-1.328-1.215-1.215-0.49-1.454-1.114-1.454-1.215