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Model info
Transcription factorPPARA
(GeneCards)
ModelPPARA_HUMAN.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
B
Motif rank
0
ConsensusnhWbYRKGbbARAGGKbMn
Best auROC (human)0.59
Best auROC (mouse)0.965
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)20
Aligned words500
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyPPAR (NR1C) {2.1.2.5}
HGNCHGNC:9232
EntrezGeneGeneID:5465
(SSTAR profile)
UniProt IDPPARA_HUMAN
UniProt ACQ07869
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.10011
0.0005 11.902160000000002
0.0001 15.628210000000001
GTEx tissue expression atlas PPARA expression
ReMap ChIP-seq dataset list PPARA datasets
Motifs in JASPAR
MA1148.1 (PPARA::RXRA; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0192.021.025.013.077.021.02.021.046.024.023.017.035.034.021.028.0
02157.011.026.056.066.04.03.027.044.05.010.012.021.011.08.039.0
0329.0107.0120.032.010.07.03.011.08.018.011.010.013.050.052.019.0
046.08.013.033.021.032.06.0123.012.030.025.0119.09.018.019.026.0
0524.00.019.05.070.04.07.07.033.04.023.03.095.06.0191.09.0
0632.00.0180.010.02.00.06.06.016.03.0177.044.02.00.020.02.0
076.03.041.02.01.01.00.01.055.07.0310.011.05.04.050.03.0
086.010.041.010.04.06.00.05.037.092.0141.0131.05.07.01.04.0
094.029.014.05.014.070.08.023.016.0108.037.022.016.073.044.017.0
1041.01.08.00.0271.06.02.01.093.00.09.01.059.06.02.00.0
11288.014.0136.026.010.01.01.01.014.01.05.01.01.00.01.00.0
12258.00.053.02.014.00.02.00.0113.00.030.00.015.02.011.00.0
1350.01.0342.07.00.00.01.01.022.00.071.03.00.00.02.00.0
142.00.070.00.00.00.01.00.015.02.0312.087.00.00.011.00.0
151.00.010.06.00.00.00.02.018.042.079.0255.01.04.019.063.0
162.014.04.00.010.023.02.011.013.062.019.014.020.0193.060.053.0
1729.08.05.03.0230.028.012.022.067.09.06.03.039.012.022.05.0
1877.0119.0112.057.020.013.04.020.08.09.09.019.07.010.07.09.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
011.072-0.392-0.22-0.860.894-0.392-2.584-0.3920.383-0.26-0.302-0.5990.1120.083-0.392-0.108
021.604-1.022-0.1810.5780.741-1.975-2.234-0.1440.339-1.77-1.114-0.938-0.392-1.022-1.3280.219
03-0.0741.2221.3360.023-1.114-1.454-2.234-1.022-1.328-0.543-1.022-1.114-0.860.4650.504-0.49
04-1.6-1.328-0.860.054-0.3920.023-1.61.361-0.938-0.04-0.221.328-1.215-0.543-0.49-0.181
05-0.26-4.4-0.49-1.770.8-1.975-1.454-1.4540.054-1.975-0.302-2.2341.104-1.61.8-1.215
060.023-4.41.741-1.114-2.584-4.4-1.6-1.6-0.658-2.2341.7240.339-2.584-4.4-0.439-2.584
07-1.6-2.2340.269-2.584-3.126-3.126-4.4-3.1260.56-1.4542.283-1.022-1.77-1.9750.465-2.234
08-1.6-1.1140.269-1.114-1.975-1.6-4.4-1.770.1671.0721.4971.424-1.77-1.454-3.126-1.975
09-1.975-0.074-0.788-1.77-0.7880.8-1.328-0.302-0.6581.2310.167-0.346-0.6580.8410.339-0.599
100.269-3.126-1.328-4.42.149-1.6-2.584-3.1261.082-4.4-1.215-3.1260.63-1.6-2.584-4.4
112.21-0.7881.461-0.181-1.114-3.126-3.126-3.126-0.788-3.126-1.77-3.126-3.126-4.4-3.126-4.4
122.1-4.40.523-2.584-0.788-4.4-2.584-4.41.276-4.4-0.04-4.4-0.721-2.584-1.022-4.4
130.465-3.1262.382-1.454-4.4-4.4-3.126-3.126-0.346-4.40.814-2.234-4.4-4.4-2.584-4.4
14-2.584-4.40.8-4.4-4.4-4.4-3.126-4.4-0.721-2.5842.291.016-4.4-4.4-1.022-4.4
15-3.126-4.4-1.114-1.6-4.4-4.4-4.4-2.584-0.5430.2930.922.088-3.126-1.975-0.490.695
16-2.584-0.788-1.975-4.4-1.114-0.302-2.584-1.022-0.860.679-0.49-0.788-0.4391.810.6460.523
17-0.074-1.328-1.77-2.2341.985-0.108-0.938-0.3460.756-1.215-1.6-2.2340.219-0.938-0.346-1.77
180.8941.3281.2680.595-0.439-0.86-1.975-0.439-1.328-1.215-1.215-0.49-1.454-1.114-1.454-1.215