We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPPARA
(GeneCards)
ModelPPARA_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length17
Quality
B
Motif rank
0
ConsensushWbKRGGbbARAGGKYR
Best auROC (human)0.576
Best auROC (mouse)0.956
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)20
Aligned words500
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyPPAR (NR1C) {2.1.2.5}
HGNCHGNC:9232
EntrezGeneGeneID:5465
(SSTAR profile)
UniProt IDPPARA_HUMAN
UniProt ACQ07869
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.031359999999999
0.0005 5.9406099999999995
0.0001 7.8178600000000005
GTEx tissue expression atlas PPARA expression
ReMap ChIP-seq dataset list PPARA datasets
Motifs in JASPAR
MA1148.1 (PPARA::RXRA; Homo sapiens)
PCM
ACGT
01246.0108.063.083.0
02267.012.044.0177.0
0341.0211.0184.064.0
0431.058.076.0335.0
05222.015.0234.029.0
0647.01.0419.033.0
0774.06.0401.019.0
0861.091.0194.0154.0
0951.0259.0131.059.0
10462.09.027.02.0
11326.021.0128.025.0
12406.00.094.00.0
1366.02.0414.018.0
1429.04.0402.065.0
1520.059.0126.0295.0
1637.0307.076.080.0
17362.041.049.048.0
PWM
ACGT
010.671-0.144-0.673-0.403
020.752-2.234-1.0220.344
03-1.090.5190.383-0.658
04-1.358-0.754-0.490.978
050.569-2.0340.621-1.421
06-0.958-3.9031.201-1.298
07-0.516-2.8191.157-1.818
08-0.705-0.3130.4350.206
09-0.8790.7220.046-0.737
101.298-2.484-1.489-3.573
110.951-1.7250.023-1.561
121.17-4.4-0.281-4.4
13-0.628-3.5731.189-1.868
14-1.421-3.1261.16-0.643
15-1.77-0.7370.0080.852
16-1.1890.891-0.49-0.439
171.055-1.09-0.918-0.938