Model info
| Transcription factor | PPARA (GeneCards) | ||||||||
| Model | PPARA_HUMAN.H11MO.1.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 9 | ||||||||
| Quality | B | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | MRAGGKCAd | ||||||||
| Best auROC (human) | 0.553 | ||||||||
| Best auROC (mouse) | 0.833 | ||||||||
| Peak sets in benchmark (human) | 5 | ||||||||
| Peak sets in benchmark (mouse) | 20 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
| TF subfamily | PPAR (NR1C) {2.1.2.5} | ||||||||
| HGNC | HGNC:9232 | ||||||||
| EntrezGene | GeneID:5465 (SSTAR profile) | ||||||||
| UniProt ID | PPARA_HUMAN | ||||||||
| UniProt AC | Q07869 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | PPARA expression | ||||||||
| ReMap ChIP-seq dataset list | PPARA datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 360.0 | 75.0 | 36.0 | 29.0 |
| 02 | 296.0 | 71.0 | 130.0 | 3.0 |
| 03 | 442.0 | 1.0 | 56.0 | 1.0 |
| 04 | 25.0 | 3.0 | 467.0 | 5.0 |
| 05 | 4.0 | 4.0 | 442.0 | 50.0 |
| 06 | 6.0 | 52.0 | 105.0 | 337.0 |
| 07 | 2.0 | 443.0 | 40.0 | 15.0 |
| 08 | 481.0 | 3.0 | 7.0 | 9.0 |
| 09 | 108.0 | 69.0 | 248.0 | 75.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1.05 | -0.503 | -1.215 | -1.421 |
| 02 | 0.855 | -0.556 | 0.039 | -3.325 |
| 03 | 1.254 | -3.903 | -0.788 | -3.903 |
| 04 | -1.561 | -3.325 | 1.309 | -2.961 |
| 05 | -3.126 | -3.126 | 1.254 | -0.898 |
| 06 | -2.819 | -0.86 | -0.172 | 0.984 |
| 07 | -3.573 | 1.256 | -1.114 | -2.034 |
| 08 | 1.338 | -3.325 | -2.694 | -2.484 |
| 09 | -0.144 | -0.584 | 0.679 | -0.503 |