Model info
| Transcription factor | Ppara | ||||||||
| Model | PPARA_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 17 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | hWbWRdGbvARAGGKbR | ||||||||
| Best auROC (human) | 0.585 | ||||||||
| Best auROC (mouse) | 0.958 | ||||||||
| Peak sets in benchmark (human) | 5 | ||||||||
| Peak sets in benchmark (mouse) | 20 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
| TF subfamily | PPAR (NR1C) {2.1.2.5} | ||||||||
| MGI | MGI:104740 | ||||||||
| EntrezGene | GeneID:19013 (SSTAR profile) | ||||||||
| UniProt ID | PPARA_MOUSE | ||||||||
| UniProt AC | P23204 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Ppara expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 269.0 | 109.0 | 57.0 | 65.0 |
| 02 | 286.0 | 25.0 | 50.0 | 139.0 |
| 03 | 57.0 | 199.0 | 186.0 | 58.0 |
| 04 | 65.0 | 54.0 | 50.0 | 331.0 |
| 05 | 236.0 | 8.0 | 229.0 | 27.0 |
| 06 | 52.0 | 5.0 | 391.0 | 52.0 |
| 07 | 46.0 | 10.0 | 426.0 | 18.0 |
| 08 | 39.0 | 80.0 | 178.0 | 203.0 |
| 09 | 54.0 | 244.0 | 151.0 | 51.0 |
| 10 | 456.0 | 10.0 | 27.0 | 7.0 |
| 11 | 323.0 | 22.0 | 130.0 | 25.0 |
| 12 | 420.0 | 1.0 | 66.0 | 13.0 |
| 13 | 39.0 | 3.0 | 452.0 | 6.0 |
| 14 | 31.0 | 5.0 | 402.0 | 62.0 |
| 15 | 19.0 | 42.0 | 117.0 | 322.0 |
| 16 | 44.0 | 261.0 | 114.0 | 81.0 |
| 17 | 367.0 | 39.0 | 53.0 | 41.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.76 | -0.135 | -0.771 | -0.643 |
| 02 | 0.821 | -1.561 | -0.898 | 0.105 |
| 03 | -0.771 | 0.46 | 0.393 | -0.754 |
| 04 | -0.643 | -0.823 | -0.898 | 0.966 |
| 05 | 0.63 | -2.584 | 0.6 | -1.489 |
| 06 | -0.86 | -2.961 | 1.132 | -0.86 |
| 07 | -0.979 | -2.394 | 1.217 | -1.868 |
| 08 | -1.138 | -0.439 | 0.35 | 0.48 |
| 09 | -0.823 | 0.663 | 0.187 | -0.879 |
| 10 | 1.285 | -2.394 | -1.489 | -2.694 |
| 11 | 0.942 | -1.681 | 0.039 | -1.561 |
| 12 | 1.203 | -3.903 | -0.628 | -2.163 |
| 13 | -1.138 | -3.325 | 1.276 | -2.819 |
| 14 | -1.358 | -2.961 | 1.16 | -0.689 |
| 15 | -1.818 | -1.067 | -0.065 | 0.939 |
| 16 | -1.022 | 0.73 | -0.091 | -0.427 |
| 17 | 1.069 | -1.138 | -0.841 | -1.09 |