Transcription factor | Ppara | ||||||||
Model | PPARA_MOUSE.H11MO.1.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | ![]() | ||||||||
LOGO (reverse complement) | ![]() | ||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 9 | ||||||||
Quality | A | ||||||||
Motif rank | 1 | ||||||||
Consensus | SARAGGKSA | ||||||||
Best auROC (human) | 0.483 | ||||||||
Best auROC (mouse) | 0.863 | ||||||||
Peak sets in benchmark (human) | 5 | ||||||||
Peak sets in benchmark (mouse) | 20 | ||||||||
Aligned words | 500 | ||||||||
TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
TF subfamily | PPAR (NR1C) {2.1.2.5} | ||||||||
MGI | MGI:104740 | ||||||||
EntrezGene | GeneID:19013 (SSTAR profile) | ||||||||
UniProt ID | PPARA_MOUSE | ||||||||
UniProt AC | P23204 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Ppara expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 42.0 | 299.0 | 117.0 | 42.0 |
02 | 453.0 | 21.0 | 14.0 | 12.0 |
03 | 347.0 | 41.0 | 107.0 | 5.0 |
04 | 469.0 | 0.0 | 29.0 | 2.0 |
05 | 22.0 | 3.0 | 469.0 | 6.0 |
06 | 10.0 | 1.0 | 442.0 | 47.0 |
07 | 12.0 | 41.0 | 103.0 | 344.0 |
08 | 22.0 | 396.0 | 48.0 | 34.0 |
09 | 436.0 | 24.0 | 13.0 | 27.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -1.067 | 0.865 | -0.065 | -1.067 |
02 | 1.279 | -1.725 | -2.096 | -2.234 |
03 | 1.013 | -1.09 | -0.153 | -2.961 |
04 | 1.313 | -4.4 | -1.421 | -3.573 |
05 | -1.681 | -3.325 | 1.313 | -2.819 |
06 | -2.394 | -3.903 | 1.254 | -0.958 |
07 | -2.234 | -1.09 | -0.191 | 1.004 |
08 | -1.681 | 1.145 | -0.938 | -1.27 |
09 | 1.241 | -1.6 | -2.163 | -1.489 |