We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPPARG
(GeneCards)
ModelPPARG_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
A
Motif rank
0
ConsensusnhWbYRGRnbARAGKKbRn
Best auROC (human)0.963
Best auROC (mouse)0.963
Peak sets in benchmark (human)53
Peak sets in benchmark (mouse)114
Aligned words486
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyPPAR (NR1C) {2.1.2.5}
HGNCHGNC:9236
EntrezGeneGeneID:5468
(SSTAR profile)
UniProt IDPPARG_HUMAN
UniProt ACP37231
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.30386
0.0005 12.06551
0.0001 15.72141
GTEx tissue expression atlas PPARG expression
ReMap ChIP-seq dataset list PPARG datasets
Motifs in JASPAR
MA0065.1 (PPARG::RXRA; Homo sapiens)
MA0066.1 (PPARG; Homo sapiens)
MA0065.2 (Pparg::Rxra; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0172.014.018.016.080.022.03.022.053.029.020.014.029.036.012.044.0
02144.07.013.070.048.01.06.046.027.00.07.019.027.02.06.061.0
0323.099.092.032.03.01.01.05.02.014.015.01.010.080.086.020.0
047.03.03.025.020.022.06.0146.014.020.026.0134.08.05.014.031.0
0521.03.023.02.041.03.02.04.029.03.015.02.0105.02.0213.016.0
0616.03.0164.013.00.00.011.00.010.02.0205.036.01.00.021.02.0
076.00.019.02.01.00.04.00.078.08.0307.08.07.01.038.05.0
0829.013.044.06.02.00.03.04.050.068.0124.0126.07.03.04.01.0
095.041.026.016.018.040.010.016.025.083.053.014.07.042.068.020.0
1042.03.07.03.0189.06.03.08.0138.03.013.03.054.02.08.02.0
11273.010.0116.024.08.00.03.03.021.02.07.01.06.02.06.02.0
12263.00.043.02.012.00.02.00.0101.01.030.00.016.03.010.01.0
1338.00.0349.05.00.00.03.01.015.01.068.01.01.00.02.00.0
142.01.048.03.00.00.01.00.031.08.0323.060.00.00.07.00.0
153.01.023.06.02.01.03.03.017.043.0134.0185.02.01.012.048.0
162.011.08.03.013.017.02.014.038.066.036.032.023.0130.061.028.0
1749.06.013.08.0168.011.021.024.074.06.015.012.043.08.019.07.0
1897.076.0108.053.06.09.03.013.015.022.017.014.09.09.012.021.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.86-0.756-0.511-0.6260.965-0.314-2.202-0.3140.555-0.042-0.407-0.756-0.0420.172-0.9060.371
021.55-1.423-0.8280.8320.457-3.095-1.5680.415-0.112-4.373-1.423-0.458-0.112-2.552-1.5680.695
03-0.271.1771.1040.056-2.202-3.095-3.095-1.738-2.552-0.756-0.689-3.095-1.0820.9651.037-0.407
04-1.423-2.202-2.202-0.188-0.407-0.314-1.5681.564-0.756-0.407-0.1491.479-1.296-1.738-0.7560.024
05-0.359-2.202-0.27-2.5520.301-2.202-2.552-1.944-0.042-2.202-0.689-2.5521.235-2.5521.941-0.626
06-0.626-2.2021.68-0.828-4.373-4.373-0.99-4.373-1.082-2.5521.9030.172-3.095-4.373-0.359-2.552
07-1.568-4.373-0.458-2.552-3.095-4.373-1.944-4.3730.939-1.2962.306-1.296-1.423-3.0950.226-1.738
08-0.042-0.8280.371-1.568-2.552-4.373-2.202-1.9440.4980.8031.4011.417-1.423-2.202-1.944-3.095
09-1.7380.301-0.149-0.626-0.5110.276-1.082-0.626-0.1881.0010.555-0.756-1.4230.3250.803-0.407
100.325-2.202-1.423-2.2021.822-1.568-2.202-1.2961.508-2.202-0.828-2.2020.574-2.552-1.296-2.552
112.189-1.0821.335-0.228-1.296-4.373-2.202-2.202-0.359-2.552-1.423-3.095-1.568-2.552-1.568-2.552
122.151-4.3730.348-2.552-0.906-4.373-2.552-4.3731.197-3.095-0.008-4.373-0.626-2.202-1.082-3.095
130.226-4.3732.434-1.738-4.373-4.373-2.202-3.095-0.689-3.0950.803-3.095-3.095-4.373-2.552-4.373
14-2.552-3.0950.457-2.202-4.373-4.373-3.095-4.3730.024-1.2962.3570.679-4.373-4.373-1.423-4.373
15-2.202-3.095-0.27-1.568-2.552-3.095-2.202-2.202-0.5670.3481.4791.8-2.552-3.095-0.9060.457
16-2.552-0.99-1.296-2.202-0.828-0.567-2.552-0.7560.2260.7730.1720.056-0.271.4480.695-0.076
170.477-1.568-0.828-1.2961.704-0.99-0.359-0.2280.887-1.568-0.689-0.9060.348-1.296-0.458-1.423
181.1560.9141.2640.555-1.568-1.183-2.202-0.828-0.689-0.314-0.567-0.756-1.183-1.183-0.906-0.359