Model info
| Transcription factor | PPARG (GeneCards) | ||||||||
| Model | PPARG_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 17 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vWbbRGGbSARAGGKSR | ||||||||
| Best auROC (human) | 0.958 | ||||||||
| Best auROC (mouse) | 0.957 | ||||||||
| Peak sets in benchmark (human) | 53 | ||||||||
| Peak sets in benchmark (mouse) | 114 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
| TF subfamily | PPAR (NR1C) {2.1.2.5} | ||||||||
| HGNC | HGNC:9236 | ||||||||
| EntrezGene | GeneID:5468 (SSTAR profile) | ||||||||
| UniProt ID | PPARG_HUMAN | ||||||||
| UniProt AC | P37231 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | PPARG expression | ||||||||
| ReMap ChIP-seq dataset list | PPARG datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 235.0 | 127.0 | 82.0 | 56.0 |
| 02 | 244.0 | 13.0 | 63.0 | 180.0 |
| 03 | 46.0 | 180.0 | 209.0 | 65.0 |
| 04 | 55.0 | 61.0 | 104.0 | 280.0 |
| 05 | 194.0 | 11.0 | 268.0 | 27.0 |
| 06 | 34.0 | 0.0 | 420.0 | 46.0 |
| 07 | 64.0 | 13.0 | 400.0 | 23.0 |
| 08 | 50.0 | 61.0 | 215.0 | 174.0 |
| 09 | 28.0 | 276.0 | 151.0 | 45.0 |
| 10 | 449.0 | 9.0 | 34.0 | 8.0 |
| 11 | 287.0 | 24.0 | 167.0 | 22.0 |
| 12 | 395.0 | 3.0 | 99.0 | 3.0 |
| 13 | 36.0 | 3.0 | 446.0 | 15.0 |
| 14 | 34.0 | 2.0 | 402.0 | 62.0 |
| 15 | 26.0 | 38.0 | 160.0 | 276.0 |
| 16 | 60.0 | 309.0 | 89.0 | 42.0 |
| 17 | 377.0 | 30.0 | 58.0 | 35.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.626 | 0.016 | -0.415 | -0.788 |
| 02 | 0.663 | -2.163 | -0.673 | 0.361 |
| 03 | -0.979 | 0.361 | 0.509 | -0.643 |
| 04 | -0.805 | -0.705 | -0.181 | 0.8 |
| 05 | 0.435 | -2.311 | 0.756 | -1.489 |
| 06 | -1.27 | -4.4 | 1.203 | -0.979 |
| 07 | -0.658 | -2.163 | 1.155 | -1.64 |
| 08 | -0.898 | -0.705 | 0.537 | 0.327 |
| 09 | -1.454 | 0.785 | 0.187 | -1.0 |
| 10 | 1.27 | -2.484 | -1.27 | -2.584 |
| 11 | 0.824 | -1.6 | 0.287 | -1.681 |
| 12 | 1.142 | -3.325 | -0.23 | -3.325 |
| 13 | -1.215 | -3.325 | 1.263 | -2.034 |
| 14 | -1.27 | -3.573 | 1.16 | -0.689 |
| 15 | -1.525 | -1.163 | 0.244 | 0.785 |
| 16 | -0.721 | 0.898 | -0.335 | -1.067 |
| 17 | 1.096 | -1.389 | -0.754 | -1.242 |