We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPPARG
(GeneCards)
ModelPPARG_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
A
Motif rank
1
ConsensusSARAGKKhA
Best auROC (human)0.808
Best auROC (mouse)0.836
Peak sets in benchmark (human)53
Peak sets in benchmark (mouse)114
Aligned words500
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyPPAR (NR1C) {2.1.2.5}
HGNCHGNC:9236
EntrezGeneGeneID:5468
(SSTAR profile)
UniProt IDPPARG_HUMAN
UniProt ACP37231
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.534485
0.0005 6.40947
0.0001 7.98381
GTEx tissue expression atlas PPARG expression
ReMap ChIP-seq dataset list PPARG datasets
Motifs in JASPAR
PCM
ACGT
0111.0388.076.025.0
02477.04.00.019.0
03287.07.0201.05.0
04437.00.061.02.0
0526.00.0469.05.0
0630.06.0383.081.0
0722.046.0147.0285.0
0864.0309.063.064.0
09443.021.010.026.0
PWM
ACGT
01-2.3111.124-0.49-1.561
021.33-3.126-4.4-1.818
030.824-2.6940.47-2.961
041.243-4.4-0.705-3.573
05-1.525-4.41.313-2.961
06-1.389-2.8191.111-0.427
07-1.681-0.9790.160.817
08-0.6580.898-0.673-0.658
091.256-1.725-2.394-1.525