Model info
| Transcription factor | PPARG (GeneCards) | ||||||||
| Model | PPARG_HUMAN.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 9 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | SARAGKKhA | ||||||||
| Best auROC (human) | 0.808 | ||||||||
| Best auROC (mouse) | 0.836 | ||||||||
| Peak sets in benchmark (human) | 53 | ||||||||
| Peak sets in benchmark (mouse) | 114 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
| TF subfamily | PPAR (NR1C) {2.1.2.5} | ||||||||
| HGNC | HGNC:9236 | ||||||||
| EntrezGene | GeneID:5468 (SSTAR profile) | ||||||||
| UniProt ID | PPARG_HUMAN | ||||||||
| UniProt AC | P37231 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | PPARG expression | ||||||||
| ReMap ChIP-seq dataset list | PPARG datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 11.0 | 388.0 | 76.0 | 25.0 |
| 02 | 477.0 | 4.0 | 0.0 | 19.0 |
| 03 | 287.0 | 7.0 | 201.0 | 5.0 |
| 04 | 437.0 | 0.0 | 61.0 | 2.0 |
| 05 | 26.0 | 0.0 | 469.0 | 5.0 |
| 06 | 30.0 | 6.0 | 383.0 | 81.0 |
| 07 | 22.0 | 46.0 | 147.0 | 285.0 |
| 08 | 64.0 | 309.0 | 63.0 | 64.0 |
| 09 | 443.0 | 21.0 | 10.0 | 26.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -2.311 | 1.124 | -0.49 | -1.561 |
| 02 | 1.33 | -3.126 | -4.4 | -1.818 |
| 03 | 0.824 | -2.694 | 0.47 | -2.961 |
| 04 | 1.243 | -4.4 | -0.705 | -3.573 |
| 05 | -1.525 | -4.4 | 1.313 | -2.961 |
| 06 | -1.389 | -2.819 | 1.111 | -0.427 |
| 07 | -1.681 | -0.979 | 0.16 | 0.817 |
| 08 | -0.658 | 0.898 | -0.673 | -0.658 |
| 09 | 1.256 | -1.725 | -2.394 | -1.525 |