We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPparg
ModelPPARG_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length20
Quality
A
Motif rank
0
ConsensusvnhdbbRKGbSARAGGKbRn
Best auROC (human)0.969
Best auROC (mouse)0.975
Peak sets in benchmark (human)53
Peak sets in benchmark (mouse)114
Aligned words498
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyPPAR (NR1C) {2.1.2.5}
MGIMGI:97747
EntrezGeneGeneID:19016
(SSTAR profile)
UniProt IDPPARG_MOUSE
UniProt ACP37238
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.86391
0.0005 11.707360000000001
0.0001 15.525760000000002
GTEx tissue expression atlas Pparg expression
Motifs in JASPAR
MA0065.1 (PPARG::RXRA; Homo sapiens)
MA0066.1 (PPARG; Homo sapiens)
MA0065.2 (Pparg::Rxra; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0131.021.055.010.035.082.02.044.064.024.041.042.016.03.014.014.0
0292.021.014.019.086.024.03.017.059.034.09.010.028.032.018.032.0
03146.016.042.061.066.01.05.039.026.02.08.08.024.02.016.036.0
0428.099.0100.035.02.05.07.07.012.018.027.014.08.050.065.021.0
0511.07.012.020.018.016.012.0126.09.026.041.0123.011.010.030.026.0
0617.08.024.00.045.04.03.07.044.012.028.011.096.06.0185.08.0
0729.00.0166.07.08.01.09.012.010.00.0175.055.01.00.023.02.0
086.02.035.05.00.00.00.01.051.04.0298.020.01.02.071.02.0
095.010.038.05.04.02.01.01.053.069.0133.0149.09.04.010.05.0
106.047.010.08.07.056.03.019.011.0114.042.015.013.075.061.011.0
1130.02.05.00.0279.06.05.02.0108.02.04.02.045.03.04.01.0
12305.010.0132.015.010.00.02.01.010.01.06.01.05.00.00.00.0
13277.01.050.02.010.00.01.00.0118.01.021.00.08.01.08.00.0
1425.03.0382.03.01.00.01.01.018.00.058.04.00.00.02.00.0
150.00.040.04.00.00.03.00.025.05.0333.080.00.00.07.01.0
160.00.018.07.00.00.00.05.011.040.0106.0226.00.03.017.065.0
171.08.01.01.06.026.00.011.012.080.024.025.019.0175.065.044.0
1824.09.04.01.0221.025.014.029.064.08.014.04.035.08.030.08.0
1968.0105.0105.066.015.013.01.021.015.018.011.018.04.010.09.019.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.004-0.3880.564-1.110.1160.961-2.580.3430.715-0.2560.2730.296-0.654-2.23-0.784-0.784
021.076-0.388-0.784-0.4861.008-0.256-2.23-0.5950.6340.087-1.211-1.11-0.1040.027-0.5390.027
031.536-0.6540.2960.6670.745-3.122-1.7660.223-0.177-2.58-1.324-1.324-0.256-2.58-0.6540.144
04-0.1041.1491.1590.116-2.58-1.766-1.451-1.451-0.934-0.539-0.14-0.784-1.3240.4690.73-0.388
05-1.018-1.451-0.934-0.435-0.539-0.654-0.9341.389-1.211-0.1770.2731.365-1.018-1.11-0.036-0.177
06-0.595-1.324-0.256-4.3970.365-1.971-2.23-1.4510.343-0.934-0.104-1.0181.118-1.5961.772-1.324
07-0.07-4.3971.664-1.451-1.324-3.122-1.211-0.934-1.11-4.3971.7170.564-3.122-4.397-0.298-2.58
08-1.596-2.580.116-1.766-4.397-4.397-4.397-3.1220.489-1.9712.248-0.435-3.122-2.580.818-2.58
09-1.766-1.110.197-1.766-1.971-2.58-3.122-3.1220.5270.7891.4431.556-1.211-1.971-1.11-1.766
10-1.5960.408-1.11-1.324-1.4510.582-2.23-0.486-1.0181.2890.296-0.717-0.8560.8720.667-1.018
11-0.036-2.58-1.766-4.3972.182-1.596-1.766-2.581.235-2.58-1.971-2.580.365-2.23-1.971-3.122
122.271-1.111.435-0.717-1.11-4.397-2.58-3.122-1.11-3.122-1.596-3.122-1.766-4.397-4.397-4.397
132.175-3.1220.469-2.58-1.11-4.397-3.122-4.3971.324-3.122-0.388-4.397-1.324-3.122-1.324-4.397
14-0.216-2.232.496-2.23-3.122-4.397-3.122-3.122-0.539-4.3970.617-1.971-4.397-4.397-2.58-4.397
15-4.397-4.3970.248-1.971-4.397-4.397-2.23-4.397-0.216-1.7662.3590.936-4.397-4.397-1.451-3.122
16-4.397-4.397-0.539-1.451-4.397-4.397-4.397-1.766-1.0180.2481.2171.972-4.397-2.23-0.5950.73
17-3.122-1.324-3.122-3.122-1.596-0.177-4.397-1.018-0.9340.936-0.256-0.216-0.4861.7170.730.343
18-0.256-1.211-1.971-3.1221.95-0.216-0.784-0.070.715-1.324-0.784-1.9710.116-1.324-0.036-1.324
190.7751.2071.2070.745-0.717-0.856-3.122-0.388-0.717-0.539-1.018-0.539-1.971-1.11-1.211-0.486