Model info
| Transcription factor | Pparg | ||||||||
| Model | PPARG_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 17 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | hWbhRKGbSARAGGKhR | ||||||||
| Best auROC (human) | 0.959 | ||||||||
| Best auROC (mouse) | 0.96 | ||||||||
| Peak sets in benchmark (human) | 53 | ||||||||
| Peak sets in benchmark (mouse) | 114 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
| TF subfamily | PPAR (NR1C) {2.1.2.5} | ||||||||
| MGI | MGI:97747 | ||||||||
| EntrezGene | GeneID:19016 (SSTAR profile) | ||||||||
| UniProt ID | PPARG_MOUSE | ||||||||
| UniProt AC | P37238 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Pparg expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 273.0 | 84.0 | 61.0 | 82.0 |
| 02 | 270.0 | 9.0 | 54.0 | 167.0 |
| 03 | 59.0 | 176.0 | 186.0 | 79.0 |
| 04 | 59.0 | 59.0 | 58.0 | 324.0 |
| 05 | 199.0 | 14.0 | 264.0 | 23.0 |
| 06 | 50.0 | 1.0 | 376.0 | 73.0 |
| 07 | 83.0 | 11.0 | 391.0 | 15.0 |
| 08 | 53.0 | 93.0 | 208.0 | 146.0 |
| 09 | 54.0 | 288.0 | 123.0 | 35.0 |
| 10 | 450.0 | 18.0 | 22.0 | 10.0 |
| 11 | 350.0 | 16.0 | 126.0 | 8.0 |
| 12 | 396.0 | 2.0 | 99.0 | 3.0 |
| 13 | 48.0 | 0.0 | 439.0 | 13.0 |
| 14 | 37.0 | 3.0 | 392.0 | 68.0 |
| 15 | 17.0 | 61.0 | 174.0 | 248.0 |
| 16 | 79.0 | 259.0 | 77.0 | 85.0 |
| 17 | 343.0 | 34.0 | 78.0 | 45.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.774 | -0.392 | -0.705 | -0.415 |
| 02 | 0.763 | -2.484 | -0.823 | 0.287 |
| 03 | -0.737 | 0.339 | 0.393 | -0.452 |
| 04 | -0.737 | -0.737 | -0.754 | 0.945 |
| 05 | 0.46 | -2.096 | 0.741 | -1.64 |
| 06 | -0.898 | -3.903 | 1.093 | -0.529 |
| 07 | -0.403 | -2.311 | 1.132 | -2.034 |
| 08 | -0.841 | -0.291 | 0.504 | 0.154 |
| 09 | -0.823 | 0.828 | -0.016 | -1.242 |
| 10 | 1.272 | -1.868 | -1.681 | -2.394 |
| 11 | 1.022 | -1.975 | 0.008 | -2.584 |
| 12 | 1.145 | -3.573 | -0.23 | -3.325 |
| 13 | -0.938 | -4.4 | 1.247 | -2.163 |
| 14 | -1.189 | -3.325 | 1.135 | -0.599 |
| 15 | -1.92 | -0.705 | 0.327 | 0.679 |
| 16 | -0.452 | 0.722 | -0.477 | -0.38 |
| 17 | 1.002 | -1.27 | -0.464 | -1.0 |