Model info
| Transcription factor | Pparg | ||||||||
| Model | PPARG_MOUSE.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | bSARAGGKSA | ||||||||
| Best auROC (human) | 0.809 | ||||||||
| Best auROC (mouse) | 0.838 | ||||||||
| Peak sets in benchmark (human) | 53 | ||||||||
| Peak sets in benchmark (mouse) | 114 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
| TF subfamily | PPAR (NR1C) {2.1.2.5} | ||||||||
| MGI | MGI:97747 | ||||||||
| EntrezGene | GeneID:19016 (SSTAR profile) | ||||||||
| UniProt ID | PPARG_MOUSE | ||||||||
| UniProt AC | P37238 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Pparg expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 77.0 | 110.0 | 199.0 | 114.0 |
| 02 | 22.0 | 347.0 | 83.0 | 48.0 |
| 03 | 480.0 | 6.0 | 1.0 | 13.0 |
| 04 | 300.0 | 26.0 | 164.0 | 10.0 |
| 05 | 478.0 | 1.0 | 21.0 | 0.0 |
| 06 | 38.0 | 0.0 | 459.0 | 3.0 |
| 07 | 12.0 | 4.0 | 416.0 | 68.0 |
| 08 | 21.0 | 64.0 | 127.0 | 288.0 |
| 09 | 34.0 | 346.0 | 64.0 | 56.0 |
| 10 | 402.0 | 35.0 | 11.0 | 52.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.477 | -0.126 | 0.46 | -0.091 |
| 02 | -1.681 | 1.013 | -0.403 | -0.938 |
| 03 | 1.336 | -2.819 | -3.903 | -2.163 |
| 04 | 0.868 | -1.525 | 0.269 | -2.394 |
| 05 | 1.332 | -3.903 | -1.725 | -4.4 |
| 06 | -1.163 | -4.4 | 1.292 | -3.325 |
| 07 | -2.234 | -3.126 | 1.194 | -0.599 |
| 08 | -1.725 | -0.658 | 0.016 | 0.828 |
| 09 | -1.27 | 1.01 | -0.658 | -0.788 |
| 10 | 1.16 | -1.242 | -2.311 | -0.86 |