Transcription factor | Pparg | ||||||||
Model | PPARG_MOUSE.H11MO.1.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 10 | ||||||||
Quality | A | ||||||||
Motif rank | 1 | ||||||||
Consensus | bSARAGGKSA | ||||||||
Best auROC (human) | 0.809 | ||||||||
Best auROC (mouse) | 0.838 | ||||||||
Peak sets in benchmark (human) | 53 | ||||||||
Peak sets in benchmark (mouse) | 114 | ||||||||
Aligned words | 500 | ||||||||
TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
TF subfamily | PPAR (NR1C) {2.1.2.5} | ||||||||
MGI | MGI:97747 | ||||||||
EntrezGene | GeneID:19016 (SSTAR profile) | ||||||||
UniProt ID | PPARG_MOUSE | ||||||||
UniProt AC | P37238 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Pparg expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 77.0 | 110.0 | 199.0 | 114.0 |
02 | 22.0 | 347.0 | 83.0 | 48.0 |
03 | 480.0 | 6.0 | 1.0 | 13.0 |
04 | 300.0 | 26.0 | 164.0 | 10.0 |
05 | 478.0 | 1.0 | 21.0 | 0.0 |
06 | 38.0 | 0.0 | 459.0 | 3.0 |
07 | 12.0 | 4.0 | 416.0 | 68.0 |
08 | 21.0 | 64.0 | 127.0 | 288.0 |
09 | 34.0 | 346.0 | 64.0 | 56.0 |
10 | 402.0 | 35.0 | 11.0 | 52.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.477 | -0.126 | 0.46 | -0.091 |
02 | -1.681 | 1.013 | -0.403 | -0.938 |
03 | 1.336 | -2.819 | -3.903 | -2.163 |
04 | 0.868 | -1.525 | 0.269 | -2.394 |
05 | 1.332 | -3.903 | -1.725 | -4.4 |
06 | -1.163 | -4.4 | 1.292 | -3.325 |
07 | -2.234 | -3.126 | 1.194 | -0.599 |
08 | -1.725 | -0.658 | 0.016 | 0.828 |
09 | -1.27 | 1.01 | -0.658 | -0.788 |
10 | 1.16 | -1.242 | -2.311 | -0.86 |