Model info
| Transcription factor | PRDM14 (GeneCards) | ||||||||
| Model | PRD14_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 14 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | ddSWTAGRGWMShn | ||||||||
| Best auROC (human) | 0.914 | ||||||||
| Best auROC (mouse) | 0.889 | ||||||||
| Peak sets in benchmark (human) | 7 | ||||||||
| Peak sets in benchmark (mouse) | 11 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | unclassified {2.3.3.0} | ||||||||
| HGNC | HGNC:14001 | ||||||||
| EntrezGene | GeneID:63978 (SSTAR profile) | ||||||||
| UniProt ID | PRD14_HUMAN | ||||||||
| UniProt AC | Q9GZV8 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | PRDM14 expression | ||||||||
| ReMap ChIP-seq dataset list | PRDM14 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 235.0 | 60.0 | 139.0 | 66.0 |
| 02 | 199.0 | 24.0 | 224.0 | 53.0 |
| 03 | 37.0 | 79.0 | 356.0 | 28.0 |
| 04 | 86.0 | 9.0 | 20.0 | 385.0 |
| 05 | 6.0 | 5.0 | 5.0 | 484.0 |
| 06 | 491.0 | 2.0 | 3.0 | 4.0 |
| 07 | 41.0 | 30.0 | 428.0 | 1.0 |
| 08 | 288.0 | 5.0 | 184.0 | 23.0 |
| 09 | 38.0 | 32.0 | 419.0 | 11.0 |
| 10 | 320.0 | 67.0 | 17.0 | 96.0 |
| 11 | 84.0 | 369.0 | 33.0 | 14.0 |
| 12 | 19.0 | 374.0 | 68.0 | 39.0 |
| 13 | 57.0 | 203.0 | 34.0 | 206.0 |
| 14 | 190.0 | 79.0 | 131.0 | 100.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.626 | -0.721 | 0.105 | -0.628 |
| 02 | 0.46 | -1.6 | 0.578 | -0.841 |
| 03 | -1.189 | -0.452 | 1.039 | -1.454 |
| 04 | -0.368 | -2.484 | -1.77 | 1.117 |
| 05 | -2.819 | -2.961 | -2.961 | 1.345 |
| 06 | 1.359 | -3.573 | -3.325 | -3.126 |
| 07 | -1.09 | -1.389 | 1.222 | -3.903 |
| 08 | 0.828 | -2.961 | 0.383 | -1.64 |
| 09 | -1.163 | -1.328 | 1.201 | -2.311 |
| 10 | 0.932 | -0.613 | -1.92 | -0.26 |
| 11 | -0.392 | 1.074 | -1.298 | -2.096 |
| 12 | -1.818 | 1.088 | -0.599 | -1.138 |
| 13 | -0.771 | 0.48 | -1.27 | 0.495 |
| 14 | 0.415 | -0.452 | 0.046 | -0.22 |