Model info
| Transcription factor | Prdm14 | ||||||||
| Model | PRD14_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 16 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vddSKTAGRGMMYhdb | ||||||||
| Best auROC (human) | 0.858 | ||||||||
| Best auROC (mouse) | 0.928 | ||||||||
| Peak sets in benchmark (human) | 7 | ||||||||
| Peak sets in benchmark (mouse) | 11 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | unclassified {2.3.3.0} | ||||||||
| MGI | MGI:3588194 | ||||||||
| EntrezGene | GeneID:383491 (SSTAR profile) | ||||||||
| UniProt ID | PRD14_MOUSE | ||||||||
| UniProt AC | E9Q3T6 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Prdm14 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 194.0 | 87.0 | 138.0 | 81.0 |
| 02 | 163.0 | 43.0 | 209.0 | 85.0 |
| 03 | 147.0 | 17.0 | 195.0 | 141.0 |
| 04 | 43.0 | 83.0 | 350.0 | 24.0 |
| 05 | 67.0 | 25.0 | 113.0 | 295.0 |
| 06 | 25.0 | 12.0 | 29.0 | 434.0 |
| 07 | 482.0 | 1.0 | 10.0 | 7.0 |
| 08 | 39.0 | 28.0 | 433.0 | 0.0 |
| 09 | 361.0 | 7.0 | 106.0 | 26.0 |
| 10 | 42.0 | 11.0 | 429.0 | 18.0 |
| 11 | 270.0 | 166.0 | 26.0 | 38.0 |
| 12 | 110.0 | 341.0 | 17.0 | 32.0 |
| 13 | 18.0 | 399.0 | 40.0 | 43.0 |
| 14 | 51.0 | 203.0 | 29.0 | 217.0 |
| 15 | 101.0 | 57.0 | 132.0 | 210.0 |
| 16 | 80.0 | 103.0 | 230.0 | 87.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.435 | -0.357 | 0.098 | -0.427 |
| 02 | 0.263 | -1.044 | 0.509 | -0.38 |
| 03 | 0.16 | -1.92 | 0.44 | 0.119 |
| 04 | -1.044 | -0.403 | 1.022 | -1.6 |
| 05 | -0.613 | -1.561 | -0.1 | 0.852 |
| 06 | -1.561 | -2.234 | -1.421 | 1.236 |
| 07 | 1.34 | -3.903 | -2.394 | -2.694 |
| 08 | -1.138 | -1.454 | 1.234 | -4.4 |
| 09 | 1.053 | -2.694 | -0.163 | -1.525 |
| 10 | -1.067 | -2.311 | 1.224 | -1.868 |
| 11 | 0.763 | 0.281 | -1.525 | -1.163 |
| 12 | -0.126 | 0.996 | -1.92 | -1.328 |
| 13 | -1.868 | 1.152 | -1.114 | -1.044 |
| 14 | -0.879 | 0.48 | -1.421 | 0.546 |
| 15 | -0.21 | -0.771 | 0.054 | 0.514 |
| 16 | -0.439 | -0.191 | 0.604 | -0.357 |