We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPrdm16
ModelPRD16_MOUSE.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
B
Motif rank
0
ConsensusnKCCCWRRRGRvn
Best auROC (human)
Best auROC (mouse)0.876
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)3
Aligned words501
TF familyFactors with multiple dispersed zinc fingers {2.3.4}
TF subfamilyEvi-1-like factors {2.3.4.14}
MGIMGI:1917923
EntrezGeneGeneID:70673
(SSTAR profile)
UniProt IDPRD16_MOUSE
UniProt ACA2A935
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.819659999999999
0.0005 11.714770000000001
0.0001 15.478425
GTEx tissue expression atlas Prdm16 expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0111.012.020.050.010.07.010.098.010.021.031.086.05.012.025.092.0
020.036.00.00.02.048.00.02.01.083.00.02.05.0317.04.00.0
031.06.00.01.04.0413.01.066.00.02.01.01.00.03.00.01.0
040.05.00.00.07.0411.03.03.00.02.00.00.00.068.00.01.0
054.00.00.03.0269.04.013.0200.02.00.00.01.00.00.00.04.0
0676.00.0176.023.00.00.04.00.01.00.012.00.022.06.0169.011.0
0714.07.077.01.02.00.01.03.045.033.0250.033.05.04.023.02.0
089.02.052.03.025.01.013.05.0164.010.0171.06.05.01.025.08.0
093.028.0170.02.02.03.09.00.04.022.0234.01.00.04.016.02.0
101.01.05.02.041.03.04.09.0289.016.0104.020.03.01.01.00.0
1152.0150.096.036.05.09.03.04.038.050.022.04.03.017.09.02.0
1227.017.028.026.067.081.013.065.040.028.028.034.07.010.019.010.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.022-0.938-0.4390.465-1.114-1.454-1.1141.135-1.114-0.392-0.0081.004-1.77-0.938-0.221.072
02-4.40.14-4.4-4.4-2.5840.425-4.4-2.584-3.1260.969-4.4-2.584-1.772.306-1.975-4.4
03-3.126-1.6-4.4-3.126-1.9752.57-3.1260.741-4.4-2.584-3.126-3.126-4.4-2.234-4.4-3.126
04-4.4-1.77-4.4-4.4-1.4542.565-2.234-2.234-4.4-2.584-4.4-4.4-4.40.771-4.4-3.126
05-1.975-4.4-4.4-2.2342.142-1.975-0.861.846-2.584-4.4-4.4-3.126-4.4-4.4-4.4-1.975
060.881-4.41.718-0.302-4.4-4.4-1.975-4.4-3.126-4.4-0.938-4.4-0.346-1.61.678-1.022
07-0.788-1.4540.894-3.126-2.584-4.4-3.126-2.2340.3610.0542.0690.054-1.77-1.975-0.302-2.584
08-1.215-2.5840.504-2.234-0.22-3.126-0.86-1.771.648-1.1141.69-1.6-1.77-3.126-0.22-1.328
09-2.234-0.1081.684-2.584-2.584-2.234-1.215-4.4-1.975-0.3462.003-3.126-4.4-1.975-0.658-2.584
10-3.126-3.126-1.77-2.5840.269-2.234-1.975-1.2152.213-0.6581.194-0.439-2.234-3.126-3.126-4.4
110.5041.5591.1140.14-1.77-1.215-2.234-1.9750.1930.465-0.346-1.975-2.234-0.599-1.215-2.584
12-0.144-0.599-0.108-0.1810.7560.945-0.860.7260.244-0.108-0.1080.083-1.454-1.114-0.49-1.114