Transcription factor | Prdm16 | ||||||||
Model | PRD16_MOUSE.H11MO.0.B | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 10 | ||||||||
Quality | B | ||||||||
Motif rank | 0 | ||||||||
Consensus | bCCCAGRGvv | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | 0.878 | ||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | 3 | ||||||||
Aligned words | 501 | ||||||||
TF family | Factors with multiple dispersed zinc fingers {2.3.4} | ||||||||
TF subfamily | Evi-1-like factors {2.3.4.14} | ||||||||
MGI | MGI:1917923 | ||||||||
EntrezGene | GeneID:70673 (SSTAR profile) | ||||||||
UniProt ID | PRD16_MOUSE | ||||||||
UniProt AC | A2A935 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Prdm16 expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 34.0 | 249.0 | 64.0 | 153.0 |
02 | 13.0 | 410.0 | 8.0 | 69.0 |
03 | 27.0 | 392.0 | 4.0 | 77.0 |
04 | 28.0 | 462.0 | 1.0 | 9.0 |
05 | 494.0 | 5.0 | 1.0 | 0.0 |
06 | 43.0 | 4.0 | 434.0 | 19.0 |
07 | 133.0 | 7.0 | 327.0 | 33.0 |
08 | 78.0 | 9.0 | 410.0 | 3.0 |
09 | 158.0 | 90.0 | 234.0 | 18.0 |
10 | 246.0 | 118.0 | 101.0 | 35.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -1.27 | 0.683 | -0.658 | 0.2 |
02 | -2.163 | 1.179 | -2.584 | -0.584 |
03 | -1.489 | 1.135 | -3.126 | -0.477 |
04 | -1.454 | 1.298 | -3.903 | -2.484 |
05 | 1.365 | -2.961 | -3.903 | -4.4 |
06 | -1.044 | -3.126 | 1.236 | -1.818 |
07 | 0.061 | -2.694 | 0.954 | -1.298 |
08 | -0.464 | -2.484 | 1.179 | -3.325 |
09 | 0.232 | -0.324 | 0.621 | -1.868 |
10 | 0.671 | -0.057 | -0.21 | -1.242 |