We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPRDM1
(GeneCards)
ModelPRDM1_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv10
Model length17
Quality
A
Motif rank
0
ConsensusddRMAGKGAAAGTdhnn
Best auROC (human)0.982
Best auROC (mouse)0.959
Peak sets in benchmark (human)12
Peak sets in benchmark (mouse)9
Aligned words501
TF familyMore than 3 adjacent zinc finger factors {2.3.3}
TF subfamilyPRDM1-like factors {2.3.3.12}
HGNCHGNC:9346
EntrezGeneGeneID:639
(SSTAR profile)
UniProt IDPRDM1_HUMAN
UniProt ACO75626
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.59411
0.0005 10.90071
0.0001 15.69166
GTEx tissue expression atlas PRDM1 expression
ReMap ChIP-seq dataset list PRDM1 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0157.7611.6190.9117.21339.7089.5327.95512.33844.9117.21632.458.59940.5919.29593.49416.419
02117.16612.23128.62424.94910.72114.1372.06710.728175.85512.50824.33412.11111.95610.11817.12515.371
03265.56710.96628.03611.1324.72710.1811.93512.1545.30515.3656.834.6523.10421.78612.4735.795
04319.8830.032.5076.31357.5130.00.7840.038.4720.7885.5054.51126.4340.04.5872.704
0526.8654.194400.30910.9320.00.00.7880.00.940.042.4430.01.3780.07.794.359
068.7320.06.93113.5210.8391.0530.02.30167.1899.31774.59300.2356.6690.7713.0734.778
070.9021.17481.3530.00.9020.010.240.02.5040.082.090.013.1410.895306.80.0
0816.730.00.00.7182.0690.00.00.0478.9410.00.01.5420.00.00.00.0
09476.620.018.2652.8550.00.00.00.00.00.00.00.02.260.00.00.0
10469.1620.04.345.3780.00.00.00.018.2650.00.00.01.9550.00.8990.0
1113.7857.175461.6666.7560.00.00.00.00.00.04.4060.8330.00.04.1291.249
121.7842.533.535.9410.03.3321.0682.7765.74431.3518.989414.1170.00.7392.525.579
130.7010.03.0993.72818.9593.0145.76210.21611.2311.7539.1234.085.96830.776222.52789.141
1444.81825.51926.1220.40220.159.8170.05.577132.06946.12638.50123.81724.71215.06923.63643.669
1587.52323.76153.50456.9630.65114.7276.56444.58920.51519.19322.5426.00821.15215.48124.63332.198
1655.115.70551.45537.58121.91518.3593.44929.4440.64918.10924.11824.36513.35433.22244.83768.342
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.609-0.971.06-0.5860.237-1.16-1.333-0.9110.359-1.4260.037-1.2590.259-1.1841.088-0.633
021.313-0.919-0.087-0.222-1.047-0.778-2.556-1.0461.717-0.897-0.247-0.929-0.941-1.102-0.591-0.697
032.129-1.025-0.107-1.01-0.231-1.096-2.611-0.9260.368-0.697-1.478-1.837-0.298-0.355-0.9-1.632
042.315-4.40.039-1.5520.604-4.4-3.295-4.40.206-3.292-1.681-1.865-0.165-4.4-1.85-2.325
05-0.149-1.9322.539-1.028-4.4-4.4-3.292-4.4-3.17-4.40.303-4.4-2.885-4.4-1.353-1.897
06-1.244-4.4-1.464-0.822-3.249-3.088-4.4-2.4650.759-1.1820.8632.251-1.5-3.306-2.213-1.812
07-3.2-3.0080.949-4.4-3.2-4.4-1.091-4.4-2.392-4.40.958-4.4-0.849-3.2052.273-4.4
08-0.614-4.4-4.4-3.353-2.555-4.4-4.4-4.42.718-4.4-4.4-2.797-4.4-4.4-4.4-4.4
092.713-4.4-0.528-2.278-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-2.48-4.4-4.4-4.4
102.697-4.4-1.901-1.702-4.4-4.4-4.4-4.4-0.528-4.4-4.4-4.4-2.603-4.4-3.201-4.4
11-0.803-1.4312.681-1.488-4.4-4.4-4.4-4.4-4.4-4.4-1.887-3.254-4.4-4.4-1.946-2.961
12-2.679-2.383-2.089-1.609-4.4-2.14-3.079-2.302-1.6410.003-0.492.573-4.4-3.334-2.387-1.668
13-3.369-4.4-2.205-2.039-0.492-2.23-1.638-1.093-1.002-2.693-1.202-1.9751.004-0.0151.9521.04
140.357-0.2-0.177-0.42-0.432-1.131-4.4-1.6681.4320.3850.206-0.268-0.232-0.716-0.2750.331
151.022-0.270.5330.595-0.019-0.739-1.5150.352-0.414-0.48-0.322-0.181-0.384-0.69-0.2350.03
160.562-0.6760.4940.182-0.35-0.523-2.11-0.0590.26-0.537-0.255-0.245-0.8340.060.3570.776