We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPRDM1
(GeneCards)
ModelPRDM1_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusRRRAGdGAAAGKdv
Best auROC (human)0.959
Best auROC (mouse)0.962
Peak sets in benchmark (human)12
Peak sets in benchmark (mouse)9
Aligned words502
TF familyMore than 3 adjacent zinc finger factors {2.3.3}
TF subfamilyPRDM1-like factors {2.3.3.12}
HGNCHGNC:9346
EntrezGeneGeneID:639
(SSTAR profile)
UniProt IDPRDM1_HUMAN
UniProt ACO75626
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.8221099999999995
0.0005 5.90371
0.0001 8.10987
GTEx tissue expression atlas PRDM1 expression
ReMap ChIP-seq dataset list PRDM1 datasets
Motifs in JASPAR
MA0508.1 (PRDM1; Homo sapiens)
MA0508.2 (PRDM1; Homo sapiens)
PCM
ACGT
01157.028.0284.031.0
02304.041.0131.024.0
03387.040.049.024.0
04457.00.039.04.0
0547.038.0404.011.0
06118.031.0109.0242.0
0723.03.0474.00.0
08496.01.03.00.0
09452.04.044.00.0
10493.00.06.01.0
1123.021.0449.07.0
1221.064.079.0336.0
1399.073.0230.098.0
14198.088.0133.081.0
PWM
ACGT
010.225-1.4540.814-1.358
020.881-1.090.046-1.6
031.122-1.114-0.918-1.6
041.287-4.4-1.138-3.126
05-0.958-1.1631.165-2.311
06-0.057-1.358-0.1350.655
07-1.64-3.3251.324-4.4
081.369-3.903-3.325-4.4
091.276-3.126-1.022-4.4
101.363-4.4-2.819-3.903
11-1.64-1.7251.27-2.694
12-1.725-0.658-0.4520.981
13-0.23-0.5290.604-0.24
140.455-0.3460.061-0.427