Model info
| Transcription factor | PRDM1 (GeneCards) | ||||||||
| Model | PRDM1_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 14 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | RRRAGdGAAAGKdv | ||||||||
| Best auROC (human) | 0.959 | ||||||||
| Best auROC (mouse) | 0.962 | ||||||||
| Peak sets in benchmark (human) | 12 | ||||||||
| Peak sets in benchmark (mouse) | 9 | ||||||||
| Aligned words | 502 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | PRDM1-like factors {2.3.3.12} | ||||||||
| HGNC | HGNC:9346 | ||||||||
| EntrezGene | GeneID:639 (SSTAR profile) | ||||||||
| UniProt ID | PRDM1_HUMAN | ||||||||
| UniProt AC | O75626 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | PRDM1 expression | ||||||||
| ReMap ChIP-seq dataset list | PRDM1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 157.0 | 28.0 | 284.0 | 31.0 |
| 02 | 304.0 | 41.0 | 131.0 | 24.0 |
| 03 | 387.0 | 40.0 | 49.0 | 24.0 |
| 04 | 457.0 | 0.0 | 39.0 | 4.0 |
| 05 | 47.0 | 38.0 | 404.0 | 11.0 |
| 06 | 118.0 | 31.0 | 109.0 | 242.0 |
| 07 | 23.0 | 3.0 | 474.0 | 0.0 |
| 08 | 496.0 | 1.0 | 3.0 | 0.0 |
| 09 | 452.0 | 4.0 | 44.0 | 0.0 |
| 10 | 493.0 | 0.0 | 6.0 | 1.0 |
| 11 | 23.0 | 21.0 | 449.0 | 7.0 |
| 12 | 21.0 | 64.0 | 79.0 | 336.0 |
| 13 | 99.0 | 73.0 | 230.0 | 98.0 |
| 14 | 198.0 | 88.0 | 133.0 | 81.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.225 | -1.454 | 0.814 | -1.358 |
| 02 | 0.881 | -1.09 | 0.046 | -1.6 |
| 03 | 1.122 | -1.114 | -0.918 | -1.6 |
| 04 | 1.287 | -4.4 | -1.138 | -3.126 |
| 05 | -0.958 | -1.163 | 1.165 | -2.311 |
| 06 | -0.057 | -1.358 | -0.135 | 0.655 |
| 07 | -1.64 | -3.325 | 1.324 | -4.4 |
| 08 | 1.369 | -3.903 | -3.325 | -4.4 |
| 09 | 1.276 | -3.126 | -1.022 | -4.4 |
| 10 | 1.363 | -4.4 | -2.819 | -3.903 |
| 11 | -1.64 | -1.725 | 1.27 | -2.694 |
| 12 | -1.725 | -0.658 | -0.452 | 0.981 |
| 13 | -0.23 | -0.529 | 0.604 | -0.24 |
| 14 | 0.455 | -0.346 | 0.061 | -0.427 |