Transcription factor | PRDM4 (GeneCards) | ||||||||
Model | PRDM4_HUMAN.H11MO.0.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | ![]() | ||||||||
LOGO (reverse complement) | ![]() | ||||||||
Data source | HT-SELEX | ||||||||
Model release | HOCOMOCOv10 | ||||||||
Model length | 16 | ||||||||
Quality | D | ||||||||
Motif rank | 0 | ||||||||
Consensus | bbGGGGRGMCTTGAAA | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 130 | ||||||||
TF family | Factors with multiple dispersed zinc fingers {2.3.4} | ||||||||
TF subfamily | unclassified {2.3.4.0} | ||||||||
HGNC | HGNC:9348 | ||||||||
EntrezGene | GeneID:11108 (SSTAR profile) | ||||||||
UniProt ID | PRDM4_HUMAN | ||||||||
UniProt AC | Q9UKN5 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | PRDM4 expression | ||||||||
ReMap ChIP-seq dataset list | PRDM4 datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 19.5 | 22.5 | 58.5 | 29.5 |
02 | 16.5 | 24.5 | 43.5 | 45.5 |
03 | 2.0 | 2.0 | 119.0 | 7.0 |
04 | 1.25 | 0.25 | 128.25 | 0.25 |
05 | 0.25 | 0.25 | 129.25 | 0.25 |
06 | 3.25 | 1.25 | 107.25 | 18.25 |
07 | 30.0 | 9.0 | 83.0 | 8.0 |
08 | 10.0 | 4.0 | 109.0 | 7.0 |
09 | 28.0 | 86.0 | 1.0 | 15.0 |
10 | 0.0 | 128.0 | 2.0 | 0.0 |
11 | 0.0 | 0.0 | 0.0 | 130.0 |
12 | 9.0 | 0.0 | 6.0 | 115.0 |
13 | 3.0 | 0.0 | 127.0 | 0.0 |
14 | 130.0 | 0.0 | 0.0 | 0.0 |
15 | 130.0 | 0.0 | 0.0 | 0.0 |
16 | 130.0 | 0.0 | 0.0 | 0.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.487 | -0.352 | 0.572 | -0.093 |
02 | -0.643 | -0.271 | 0.282 | 0.326 |
03 | -2.35 | -2.35 | 1.271 | -1.412 |
04 | -2.615 | -3.135 | 1.345 | -3.135 |
05 | -3.135 | -3.135 | 1.353 | -3.135 |
06 | -2.021 | -2.615 | 1.168 | -0.549 |
07 | -0.077 | -1.194 | 0.915 | -1.297 |
08 | -1.101 | -1.866 | 1.184 | -1.412 |
09 | -0.143 | 0.95 | -2.722 | -0.732 |
10 | -3.322 | 1.343 | -2.35 | -3.322 |
11 | -3.322 | -3.322 | -3.322 | 1.359 |
12 | -1.194 | -3.322 | -1.542 | 1.237 |
13 | -2.079 | -3.322 | 1.336 | -3.322 |
14 | 1.359 | -3.322 | -3.322 | -3.322 |
15 | 1.359 | -3.322 | -3.322 | -3.322 |
16 | 1.359 | -3.322 | -3.322 | -3.322 |