We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPrdm5
ModelPRDM5_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
A
Motif rank
0
ConsensusnhnvvnGGWGvdSvRGKhn
Best auROC (human)
Best auROC (mouse)0.956
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)12
Aligned words507
TF familyMore than 3 adjacent zinc finger factors {2.3.3}
TF subfamilyunclassified {2.3.3.0}
MGIMGI:1918029
EntrezGeneGeneID:70779
(SSTAR profile)
UniProt IDPRDM5_MOUSE
UniProt ACQ9CXE0
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.03416
0.0005 10.055810000000001
0.0001 14.16206
GTEx tissue expression atlas Prdm5 expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
018.043.020.014.051.070.014.041.036.063.024.030.08.058.09.011.0
0224.030.036.013.066.056.067.045.011.026.017.013.011.020.058.07.0
0327.035.047.03.066.043.013.010.047.059.061.011.015.021.039.03.0
0447.060.045.03.055.083.018.02.063.062.031.04.04.09.013.01.0
0527.037.048.057.029.029.08.0148.031.021.013.042.03.03.02.02.0
060.00.090.00.00.02.085.03.00.00.070.01.00.04.0245.00.0
070.00.00.00.00.01.03.02.02.00.0449.039.00.00.04.00.0
082.00.00.00.01.00.00.00.0312.022.038.084.035.01.04.01.0
0910.07.0325.08.05.00.013.05.00.00.038.04.09.00.075.01.0
1017.02.04.01.03.03.01.00.0201.098.0141.011.09.01.08.00.0
1177.013.083.057.012.08.036.048.048.031.026.049.05.00.03.04.0
125.0114.015.08.05.033.03.011.014.0118.011.05.014.084.033.027.0
1325.06.05.02.0188.0104.045.012.023.030.07.02.021.014.011.05.0
1454.01.0176.026.068.02.041.043.022.01.038.07.04.01.015.01.0
150.00.0148.00.00.01.04.00.03.01.0261.05.05.00.069.03.0
160.00.04.04.00.01.01.00.013.026.0347.096.00.02.05.01.0
177.01.04.01.07.01.05.016.0100.079.027.0151.023.026.017.035.0
1847.026.043.021.024.031.019.033.019.012.012.010.043.042.068.050.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.3280.316-0.439-0.7880.4850.8-0.7880.2690.140.695-0.26-0.04-1.3280.613-1.215-1.022
02-0.26-0.040.14-0.860.7410.5780.7560.361-1.022-0.181-0.599-0.86-1.022-0.4390.613-1.454
03-0.1440.1120.404-2.2340.7410.316-0.86-1.1140.4040.630.663-1.022-0.721-0.3920.219-2.234
040.4040.6460.361-2.2340.560.969-0.543-2.5840.6950.679-0.008-1.975-1.975-1.215-0.86-3.126
05-0.1440.1670.4250.595-0.074-0.074-1.3281.545-0.008-0.392-0.860.293-2.234-2.234-2.584-2.584
06-4.4-4.41.05-4.4-4.4-2.5840.993-2.234-4.4-4.40.8-3.126-4.4-1.9752.048-4.4
07-4.4-4.4-4.4-4.4-4.4-3.126-2.234-2.584-2.584-4.42.6540.219-4.4-4.4-1.975-4.4
08-2.584-4.4-4.4-4.4-3.126-4.4-4.4-4.42.29-0.3460.1930.9810.112-3.126-1.975-3.126
09-1.114-1.4542.331-1.328-1.77-4.4-0.86-1.77-4.4-4.40.193-1.975-1.215-4.40.868-3.126
10-0.599-2.584-1.975-3.126-2.234-2.234-3.126-4.41.8511.1351.497-1.022-1.215-3.126-1.328-4.4
110.894-0.860.9690.595-0.938-1.3280.140.4250.425-0.008-0.1810.445-1.77-4.4-2.234-1.975
12-1.771.285-0.721-1.328-1.770.054-2.234-1.022-0.7881.32-1.022-1.77-0.7880.9810.054-0.144
13-0.22-1.6-1.77-2.5841.7841.1940.361-0.938-0.302-0.04-1.454-2.584-0.392-0.788-1.022-1.77
140.542-3.1261.718-0.1810.771-2.5840.2690.316-0.346-3.1260.193-1.454-1.975-3.126-0.721-3.126
15-4.4-4.41.545-4.4-4.4-3.126-1.975-4.4-2.234-3.1262.112-1.77-1.77-4.40.785-2.234
16-4.4-4.4-1.975-1.975-4.4-3.126-3.126-4.4-0.86-0.1812.3961.114-4.4-2.584-1.77-3.126
17-1.454-3.126-1.975-3.126-1.454-3.126-1.77-0.6581.1550.92-0.1441.565-0.302-0.181-0.5990.112
180.404-0.1810.316-0.392-0.26-0.008-0.490.054-0.49-0.938-0.938-1.1140.3160.2930.7710.465