Model info
| Transcription factor | Prdm5 | ||||||||
| Model | PRDM5_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 15 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vvdGGWGvdSvdGKh | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.952 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 12 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | unclassified {2.3.3.0} | ||||||||
| MGI | MGI:1918029 | ||||||||
| EntrezGene | GeneID:70779 (SSTAR profile) | ||||||||
| UniProt ID | PRDM5_MOUSE | ||||||||
| UniProt AC | Q9CXE0 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Prdm5 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 119.0 | 188.0 | 153.0 | 40.0 |
| 02 | 195.0 | 226.0 | 55.0 | 24.0 |
| 03 | 101.0 | 35.0 | 119.0 | 245.0 |
| 04 | 0.0 | 0.0 | 499.0 | 1.0 |
| 05 | 2.0 | 0.0 | 494.0 | 4.0 |
| 06 | 376.0 | 7.0 | 31.0 | 86.0 |
| 07 | 9.0 | 36.0 | 445.0 | 10.0 |
| 08 | 248.0 | 105.0 | 107.0 | 40.0 |
| 09 | 133.0 | 53.0 | 162.0 | 152.0 |
| 10 | 63.0 | 312.0 | 73.0 | 52.0 |
| 11 | 220.0 | 170.0 | 86.0 | 24.0 |
| 12 | 187.0 | 13.0 | 207.0 | 93.0 |
| 13 | 3.0 | 3.0 | 492.0 | 2.0 |
| 14 | 7.0 | 27.0 | 383.0 | 83.0 |
| 15 | 156.0 | 101.0 | 34.0 | 209.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.049 | 0.404 | 0.2 | -1.114 |
| 02 | 0.44 | 0.587 | -0.805 | -1.6 |
| 03 | -0.21 | -1.242 | -0.049 | 0.667 |
| 04 | -4.4 | -4.4 | 1.375 | -3.903 |
| 05 | -3.573 | -4.4 | 1.365 | -3.126 |
| 06 | 1.093 | -2.694 | -1.358 | -0.368 |
| 07 | -2.484 | -1.215 | 1.261 | -2.394 |
| 08 | 0.679 | -0.172 | -0.153 | -1.114 |
| 09 | 0.061 | -0.841 | 0.256 | 0.193 |
| 10 | -0.673 | 0.907 | -0.529 | -0.86 |
| 11 | 0.56 | 0.304 | -0.368 | -1.6 |
| 12 | 0.399 | -2.163 | 0.5 | -0.291 |
| 13 | -3.325 | -3.325 | 1.361 | -3.573 |
| 14 | -2.694 | -1.489 | 1.111 | -0.403 |
| 15 | 0.219 | -0.21 | -1.27 | 0.509 |