We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPRDM6
(GeneCards)
ModelPRDM6_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
C
Motif rank
0
ConsensusvdvRRGAAAMMhv
Best auROC (human)0.951
Best auROC (mouse)
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)
Aligned words500
TF familyMore than 3 adjacent zinc finger factors {2.3.3}
TF subfamilyunclassified {2.3.3.0}
HGNCHGNC:9350
EntrezGeneGeneID:93166
(SSTAR profile)
UniProt IDPRDM6_HUMAN
UniProt ACQ9NQX0
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 6.24982
0.0005 7.156765
0.0001 8.873955
GTEx tissue expression atlas PRDM6 expression
ReMap ChIP-seq dataset list PRDM6 datasets
Motifs in JASPAR
PCM
ACGT
01232.083.0123.062.0
02265.035.0134.066.0
03217.098.0165.020.0
04308.019.0101.072.0
05236.05.0226.033.0
061.023.0471.05.0
07489.08.00.03.0
08492.02.00.06.0
09469.04.04.023.0
10380.066.034.020.0
11302.0117.056.025.0
12246.096.063.095.0
13252.078.0101.069.0
PWM
ACGT
010.613-0.403-0.016-0.689
020.745-1.2420.069-0.628
030.546-0.240.275-1.77
040.894-1.818-0.21-0.543
050.63-2.9610.587-1.298
06-3.903-1.641.317-2.961
071.355-2.584-4.4-3.325
081.361-3.573-4.4-2.819
091.313-3.126-3.126-1.64
101.104-0.628-1.27-1.77
110.875-0.065-0.788-1.561
120.671-0.26-0.673-0.271
130.695-0.464-0.21-0.584